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⚠️ SERVICE NOTICE: This instance will be decommissioned 1 december of this year (2026). Please migrate your projects to our new repository: https://gitrepo.service.rug.nl
s3970582/system_genetics
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e852072235947fda2bb085342176dd99d50dd5f7
system_genetics/rnaseq
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Hylke C. Donker e852072235 Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index.
2021-02-25 12:40:17 +01:00
..
step1_fastqc
Made snippet input- and output files more harmonised.
2021-02-23 09:16:39 +01:00
step2_trim
Made snippet input- and output files more harmonised.
2021-02-23 09:16:39 +01:00
step3_align
Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index.
2021-02-25 12:40:17 +01:00
step4_multiqc
Made snippet input- and output files more harmonised.
2021-02-23 09:16:39 +01:00
step5_count
Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index.
2021-02-25 12:40:17 +01:00
step6_overall_QC
Made snippet input- and output files more harmonised.
2021-02-23 09:16:39 +01:00
umi
Added comments to umi deduplication
2021-02-23 15:18:35 +01:00
README.md
Template structure.
2021-02-09 11:20:27 +01:00

README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA

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