42 lines
1.5 KiB
Mathematica
42 lines
1.5 KiB
Mathematica
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classdef GiftIcaReport<handle
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%GIFTICAREPORT
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% This Class will be a little tool to print to file images and timecourses
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% to quickly inspect the result of GIFT for a cleanup of fMRI data
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% some guidlines can be found below!
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% https://doi.org/10.1016/j.neuroimage.2016.12.036
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properties
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ICA_file = {}; % .nii file containing the ICA images
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TC_file = {}; % .nii file containing the TimeCourse data
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Orientation = 'sag';% orientation of images to create
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SliceNumber = []; % slice numbers to plot
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SPMPath
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end
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methods %constructor, set and get functions
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function obj = GiftIcaReport()
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%GIFTICAREPORT Construct an instance of this class
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% Detailed explanation goes here
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obj.SPMPath=[]; %check if SPM is in the path
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end
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function set.SPMPath(obj,~)
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SPMFound=which('spm'); %check if SPM in searchpath
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if isempty(SPMFound) %SPM not found
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id='GiftIcaReport:set_SPMPath:SPM_not_found';
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msg='SPM not found';
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throw(MException(id,msg));
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end
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%to do add a check on spm version
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obj.SPMPath=fileparts(SPMFound);
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end
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function outputArg = method1(obj,inputArg)
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%METHOD1 Summary of this method goes here
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% Detailed explanation goes here
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outputArg = obj.Property1 + inputArg;
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end
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end
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end
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