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system_genetics/rnaseq
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Hylke C. Donker 35f356dd33 Use BAM files for htseq-count. 2021-03-17 17:06:02 +01:00
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step1_fastqc Made snippet input- and output files more harmonised. 2021-02-23 09:16:39 +01:00
step2_trim Bug fix in trimmomatic paired-end flag. 2021-03-10 13:45:06 +01:00
step3_align Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index. 2021-02-25 12:40:17 +01:00
step4_multiqc Made snippet input- and output files more harmonised. 2021-02-23 09:16:39 +01:00
step5_count Use BAM files for htseq-count. 2021-03-17 17:06:02 +01:00
step6_overall_QC Made snippet input- and output files more harmonised. 2021-02-23 09:16:39 +01:00
umi Added comments to umi deduplication 2021-02-23 15:18:35 +01:00
README.md
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README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA