GRIAC/system_genetics

History

Hylke C. Donker 35f356dd33 Use BAM files for htseq-count.

2021-03-17 17:06:02 +01:00

..

Made snippet input- and output files more harmonised.

2021-02-23 09:16:39 +01:00

Bug fix in trimmomatic paired-end flag.

2021-03-10 13:45:06 +01:00

Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index.

2021-02-25 12:40:17 +01:00

Made snippet input- and output files more harmonised.

2021-02-23 09:16:39 +01:00

Use BAM files for htseq-count.

2021-03-17 17:06:02 +01:00

step6_overall_QC

Made snippet input- and output files more harmonised.

2021-02-23 09:16:39 +01:00

Added comments to umi deduplication

2021-02-23 15:18:35 +01:00

README.md

Template structure.

2021-02-09 11:20:27 +01:00

README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA