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⚠️ SERVICE NOTICE: This instance will be decommissioned 1 december of this year (2026). Please migrate your projects to our new repository: https://gitrepo.service.rug.nl
GRIAC/system_genetics
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51abdcdb26e9da5b7d74b0f2626e56d3cbfa254d
system_genetics/rnaseq
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Jos van Nijnatten 51abdcdb26 Trimmomatic update (simplified)
2021-02-15 16:48:39 +01:00
..
step1_fastqc
fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions.
2021-02-10 13:42:51 +01:00
step2_trim
Trimmomatic update (simplified)
2021-02-15 16:48:39 +01:00
step3_align
Template structure.
2021-02-09 11:20:27 +01:00
step4_multiqc
Template structure.
2021-02-09 11:20:27 +01:00
step5_count
Template structure.
2021-02-09 11:20:27 +01:00
step6_overall_QC
Count reads in X and Y chromosome.
2021-02-15 12:54:31 +01:00
umi
Template structure.
2021-02-09 11:20:27 +01:00
README.md
Template structure.
2021-02-09 11:20:27 +01:00

README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA

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