GRIAC
/
system_genetics
7
2
Fork 3
Code Issues Pull Requests 1 Releases Wiki Activity
system_genetics/rnaseq
History
T. Karp 981a983dd5 Merge pull request 'UMI deduplication script from Victor' (#3) from s3970582/system_genetics:master into master 
Reviewed-on: #3
 		2021-02-15 17:44:30 +01:00
..
step1_fastqc fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions. 2021-02-10 13:42:51 +01:00
step2_trim adapter comments 2021-02-15 17:03:34 +01:00
step3_align Small snippet that generates a genome index and aligns the RNAseq reads. 2021-02-12 14:46:05 +01:00
step4_multiqc Template structure. 2021-02-09 11:20:27 +01:00
step5_count Template structure. 2021-02-09 11:20:27 +01:00
step6_overall_QC Count reads in X and Y chromosome. 2021-02-15 12:54:31 +01:00
umi Added description and some comments for UMi deduplication 2021-02-15 17:18:48 +01:00
README.md Template structure. 2021-02-09 11:20:27 +01:00

README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA