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system_genetics/rnaseq
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T. Karp 981a983dd5 Merge pull request 'UMI deduplication script from Victor' (#3) from s3970582/system_genetics:master into master
Reviewed-on: #3
2021-02-15 17:44:30 +01:00
..
step1_fastqc
fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions.
2021-02-10 13:42:51 +01:00
step2_trim
adapter comments
2021-02-15 17:03:34 +01:00
step3_align
Small snippet that generates a genome index and aligns the RNAseq reads.
2021-02-12 14:46:05 +01:00
step4_multiqc
Template structure.
2021-02-09 11:20:27 +01:00
step5_count
Template structure.
2021-02-09 11:20:27 +01:00
step6_overall_QC
Count reads in X and Y chromosome.
2021-02-15 12:54:31 +01:00
umi
Added description and some comments for UMi deduplication
2021-02-15 17:18:48 +01:00
README.md
Template structure.
2021-02-09 11:20:27 +01:00

README.md

RNAseq pipeline

Snippets for the RNAseq pipeline: https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA

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