120 lines
3.2 KiB
YAML
120 lines
3.2 KiB
YAML
# Source: molgenis/templates/deployment.yaml
|
|
apiVersion: apps/v1beta2
|
|
kind: Deployment
|
|
metadata:
|
|
name: lanky-ragdoll-molgenis
|
|
labels:
|
|
app: molgenis
|
|
chart: molgenis-0.1.0
|
|
release: lanky-ragdoll
|
|
heritage: Tiller
|
|
spec:
|
|
replicas: 1
|
|
selector:
|
|
matchLabels:
|
|
app: molgenis
|
|
release: lanky-ragdoll
|
|
template:
|
|
metadata:
|
|
labels:
|
|
app: molgenis
|
|
release: lanky-ragdoll
|
|
spec:
|
|
containers:
|
|
- name: molgenis
|
|
image: "registry.molgenis.org/molgenis/molgenis-app:latest"
|
|
imagePullPolicy: Always
|
|
env:
|
|
- name: molgenis.home
|
|
value: /home/molgenis
|
|
- name: opencpu.uri.host
|
|
value: opencpu
|
|
- name: elasticsearch.transport.addresses
|
|
value: elasticsearch:9300
|
|
- name: elasticsearch.cluster.name
|
|
value: molgenis
|
|
- name: db_uri
|
|
value: "jdbc:postgresql://postgres/molgenis"
|
|
- name: db_user
|
|
value: molgenis
|
|
- name: db_password
|
|
value: molgenis
|
|
- name: admin.password
|
|
value: admin
|
|
- name: CATALINA_OPTS
|
|
value: "-Xmx1g -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
|
|
ports:
|
|
- containerPort: 8080
|
|
livenessProbe:
|
|
httpGet:
|
|
path: /
|
|
port: http
|
|
readinessProbe:
|
|
httpGet:
|
|
path: /api/v2/version
|
|
port: http
|
|
resources:
|
|
limits:
|
|
cpu: 1
|
|
memory: 1250Mi
|
|
requests:
|
|
cpu: 200m
|
|
memory: 1Gi
|
|
|
|
|
|
- name: elasticsearch
|
|
image: "docker.elastic.co/elasticsearch/elasticsearch:5.5.3"
|
|
imagePullPolicy: IfNotPresent
|
|
env:
|
|
- name: cluster.name
|
|
value: molgenis
|
|
- name: bootstrap.memory_lock
|
|
value: true
|
|
- name: ES_JAVA_OPTS
|
|
value: "-Xms512m -Xmx512m"
|
|
- name: xpack.security.enabled
|
|
value: false
|
|
- name: discovery.type
|
|
value: single-node
|
|
ports:
|
|
- containerPort: 9200
|
|
- containerPort: 9300
|
|
limits:
|
|
cpu: 1
|
|
memory: 1500Mi
|
|
requests:
|
|
cpu: 100m
|
|
memory: 1Gi
|
|
|
|
|
|
- name: postgres
|
|
image: "postgres:9.6-alpine"
|
|
imagePullPolicy: IfNotPresent
|
|
env:
|
|
- name: POSTGRES_USER
|
|
value: molgenis
|
|
- name: POSTGRES_PASSWORD
|
|
value: molgenis
|
|
- name: POSTGRES_DB
|
|
value: molgenis
|
|
ports:
|
|
- containerPort: 5432
|
|
limits:
|
|
cpu: 1
|
|
memory: 250Mi
|
|
requests:
|
|
cpu: 100m
|
|
memory: 250Mi
|
|
|
|
|
|
- name: opencpu
|
|
image: "molgenis/opencpu:latest"
|
|
imagePullPolicy: Always
|
|
ports:
|
|
- containerPort: 8004
|
|
limits:
|
|
cpu: 1
|
|
memory: 512Mi
|
|
requests:
|
|
cpu: 100m
|
|
memory: 256Mi |