A.K. Saikumar Jayalatha P280381
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  • Joined on 2020-03-03
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96a1e59daf Add 'rnaseq/step5_count/snippet_counts'
A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.

Alternative cut-off used : 150

A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.

Alternative sjbOverhang cut-off used : 150

A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.
Alternative reference file use : gencode.v19.annotation.gtf/gff3
A.K. Saikumar Jayalatha approved GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.
A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.
Alternative assembly file used : Homo_sapiens_assembly19.fasta
A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.
Alternative sjdbOverhang used : 150
A.K. Saikumar Jayalatha commented on pull request GRIAC/system_genetics#2 2021-02-12 15:29:06 +01:00
Small snippet that generates a genome index and aligns the RNAseq reads.
sjdbOverhang 150