AMR/R/globals.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
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globalVariables(c(".",
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"..property",
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"antibiotic",
"Antibiotic",
"antibiotics",
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"authors",
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"Becker",
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"cnt",
"count",
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"count.x",
"count.y",
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"cum_count",
"cum_percent",
"date_lab",
"days_diff",
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"diff.percent",
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"fctlvl",
"first_isolate_row_index",
"Freq",
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"fullname",
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"genus",
"gramstain",
"Interpretation",
"item",
"key_ab",
"key_ab_lag",
"key_ab_other",
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"Lancefield",
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"lbl",
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"median",
"mic",
"microorganisms",
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"microorganisms.old",
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"mo",
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"mo.old",
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"n",
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"name",
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"observations",
"other_pat_or_mo",
"Pasted",
"patient_id",
"prevalence",
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"R",
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"ref",
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"real_first_isolate",
"S",
"septic_patients",
"shortname",
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"species",
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"tsn",
"tsn_new",
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"value",
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"Value",
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"y",
"year"))