AMR/man/as.mic.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/classes.R
\name{as.mic}
\alias{as.mic}
\alias{is.mic}
\title{Class 'mic'}
\usage{
as.mic(x, na.rm = FALSE)

is.mic(x)
}
\arguments{
\item{x}{vector}

\item{na.rm}{a logical indicating whether missing values should be removed}
}
\value{
New class \code{mic}
}
\description{
This transforms a vector to a new class\code{mic}, which is an ordered factor with valid MIC values as levels. Invalid MIC values will be translated as \code{NA} with a warning.
}
\examples{
mic_data <- as.mic(c(">=32", "1.0", "1", "1.00", 8, "<=0.128", "8", "16", "16"))
is.mic(mic_data)
plot(mic_data)
barplot(mic_data)

\donttest{
library(dplyr)
tbl \%>\%
  mutate_at(vars(ends_with("_mic")), as.mic)
sapply(mic_data, is.mic)
}
}