<!-- Generated by pkgdown: do not edit by hand --><htmllang="en"><head><metahttp-equiv="Content-Type"content="text/html; charset=UTF-8"><metacharset="utf-8"><metahttp-equiv="X-UA-Compatible"content="IE=edge"><metaname="viewport"content="width=device-width, initial-scale=1, shrink-to-fit=no"><metaname="description"content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial agent, the generated results will reflect reality as much as possible."><title>Random MIC Values/Disk Zones/RSI Generation — random • AMR (for R)</title><!-- favicons --><linkrel="icon"type="image/png"sizes="16x16"href="../favicon-16x16.png"><linkrel="icon"type="image/png"sizes="32x32"href="../favicon-32x32.png"><linkrel="apple-touch-icon"type="image/png"sizes="180x180"href="../apple-touch-icon.png"><linkrel="apple-touch-icon"type="image/png"sizes="120x120"href="../apple-touch-icon-120x120.png"><linkrel="apple-touch-icon"type="image/png"sizes="76x76"href="../apple-touch-icon-76x76.png"><linkrel="apple-touch-icon"type="image/png"sizes="60x60"href="../apple-touch-icon-60x60.png"><scriptsrc="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><metaname="viewport"content="width=device-width, initial-scale=1, shrink-to-fit=no"><linkhref="../deps/bootstrap-5.1.3/bootstrap.min.css"rel="stylesheet"><scriptsrc="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><linkhref="../deps/Fira_Code-0.4.2/font.css"rel="stylesheet"><!-- Font Awesome icons --><linkrel="stylesheet"href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css"integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk="crossorigin="anonymous"><linkrel="stylesheet"href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css"integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw="crossorigin="anonymous"><!-- bootstrap-toc --><scriptsrc="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js"integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0="crossorigin="anonymous"></script><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js"integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4="crossorigin="anonymous"></script><!-- clipboard.js --><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js"integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI="crossorigin="anonymous"></script><!-- search --><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js"integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A=="crossorigin="anonymous"></script><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js"integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg=="crossorigin="anonymous"></script><scriptsrc="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js"integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww=="crossorigin="anonymous"></script><!-- pkgdown --><scriptsrc="../pkgdown.js"></script><linkhref="../extra.css"rel="stylesheet"><scriptsrc="../extra.js"></script><metaproperty="og:title"content="Random MIC Values/Disk Zones/RSI Generation — random"><metaproperty="og:description"content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial agent, the generated results will reflect reality as much as possible."><metaproperty="og:image"content="https://msberends.github.io/AMR/logo.svg"><metaname="twitter:card"content="summary_large_image"><metaname="twitter:creator"content="@msberends">
<p>These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial agent, the generated results will reflect reality as much as possible.</p>
<divclass="sourceCode"><preclass="sourceCode r"><code><span><spanclass="fu">random_mic</span><spanclass="op">(</span>size <spanclass="op">=</span><spanclass="cn">NULL</span>, mo <spanclass="op">=</span><spanclass="cn">NULL</span>, ab <spanclass="op">=</span><spanclass="cn">NULL</span>, <spanclass="va">...</span><spanclass="op">)</span></span>
<span></span>
<span><spanclass="fu">random_disk</span><spanclass="op">(</span>size <spanclass="op">=</span><spanclass="cn">NULL</span>, mo <spanclass="op">=</span><spanclass="cn">NULL</span>, ab <spanclass="op">=</span><spanclass="cn">NULL</span>, <spanclass="va">...</span><spanclass="op">)</span></span>
<dd><p>desired size of the returned vector. If used in a <ahref="https://rdrr.io/r/base/data.frame.html"class="external-link">data.frame</a> call or <code>dplyr</code> verb, will get the current (group) size if left blank.</p></dd>
<dt>mo</dt>
<dd><p>any <ahref="https://rdrr.io/r/base/character.html"class="external-link">character</a> that can be coerced to a valid microorganism code with <code><ahref="as.mo.html">as.mo()</a></code></p></dd>
<dt>ab</dt>
<dd><p>any <ahref="https://rdrr.io/r/base/character.html"class="external-link">character</a> that can be coerced to a valid antimicrobial agent code with <code><ahref="as.ab.html">as.ab()</a></code></p></dd>
<dt>...</dt>
<dd><p>ignored, only in place to allow future extensions</p></dd>
<dt>prob_RSI</dt>
<dd><p>a vector of length 3: the probabilities for "R" (1st value), "S" (2nd value) and "I" (3rd value)</p></dd>
<p>class <code>mic</code> for <code>random_mic()</code> (see <code><ahref="as.mic.html">as.mic()</a></code>) and class <code>disk</code> for <code>random_disk()</code> (see <code><ahref="as.disk.html">as.disk()</a></code>)</p>
<p>The base <spanstyle="R">R</span> function <code><ahref="https://rdrr.io/r/base/sample.html"class="external-link">sample()</a></code> is used for generating values.</p>
<p>Generated values are based on the EUCAST 2022 guideline as implemented in the <ahref="rsi_translation.html">rsi_translation</a> data set. To create specific generated values per bug or drug, set the <code>mo</code> and/or <code>ab</code> argument.</p>
<spanclass="r-err co"><spanclass="r-pr">#></span><spanclass="error">Error in seq.default(from = as.integer(min(df$breakpoint_R)/1.25), to = as.integer(max(df$breakpoint_S) * 1.25), by = 1):</span> 'from' must be a finite number</span>
<spanclass="r-in"><span><spanclass="fu">random_mic</span><spanclass="op">(</span><spanclass="fl">25</span>, <spanclass="st">"Klebsiella pneumoniae"</span><spanclass="op">)</span><spanclass="co"># range 0.0625-64</span></span></span>
<spanclass="r-in"><span><spanclass="fu">random_disk</span><spanclass="op">(</span><spanclass="fl">25</span>, <spanclass="st">"Klebsiella pneumoniae"</span><spanclass="op">)</span><spanclass="co"># range 8-50</span></span></span>
</main><asideclass="col-md-3"><navid="toc"><h2>On this page</h2>
</nav></aside></div>
<footer><divclass="pkgdown-footer-left">
<p></p><p><code>AMR</code> (for R). Developed at the <atarget="_blank"href="https://www.rug.nl"class="external-link">University of Groningen</a> in collaboration with non-profit organisations<br><atarget="_blank"href="https://www.certe.nl"class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <atarget="_blank"href="https://www.umcg.nl"class="external-link">University Medical Center Groningen</a>.</p>
