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< img src = "../logo.svg" class = "logo" alt = "" > < h1 > Filter Top < em > n< / em > Microorganisms< / h1 >
< small class = "dont-index" > Source: < a href = "https://github.com/msberends/AMR/blob/main/R/top_n_microorganisms.R" class = "external-link" > < code > R/top_n_microorganisms.R< / code > < / a > < / small >
< div class = "d-none name" > < code > top_n_microorganisms.Rd< / code > < / div >
< / div >
< div class = "ref-description section level2" >
< p > This function filters a data set to include only the top < em > n< / em > microorganisms based on a specified property, such as taxonomic family or genus. For example, it can filter a data set to the top 3 species, or to any species in the top 5 genera, or to the top 3 species in each of the top 5 genera.< / p >
< / div >
< div class = "section level2" >
< h2 id = "ref-usage" > Usage< a class = "anchor" aria-label = "anchor" href = "#ref-usage" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span > < span class = "fu" > top_n_microorganisms< / span > < span class = "op" > (< / span > < span class = "va" > x< / span > , < span class = "va" > n< / span > , property < span class = "op" > =< / span > < span class = "st" > "fullname"< / span > , n_for_each < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > col_mo < span class = "op" > =< / span > < span class = "cn" > NULL< / span > , < span class = "va" > ...< / span > < span class = "op" > )< / span > < / span > < / code > < / pre > < / div >
< / div >
< div class = "section level2" >
< h2 id = "arguments" > Arguments< a class = "anchor" aria-label = "anchor" href = "#arguments" > < / a > < / h2 >
< dl > < dt id = "arg-x" > x< a class = "anchor" aria-label = "anchor" href = "#arg-x" > < / a > < / dt >
< dd > < p > a data frame containing microbial data< / p > < / dd >
< dt id = "arg-n" > n< a class = "anchor" aria-label = "anchor" href = "#arg-n" > < / a > < / dt >
< dd > < p > an integer specifying the maximum number of unique values of the < code > property< / code > to include in the output< / p > < / dd >
< dt id = "arg-property" > property< a class = "anchor" aria-label = "anchor" href = "#arg-property" > < / a > < / dt >
< dd > < p > a character string indicating the microorganism property to use for filtering. Must be one of the column names of the < a href = "microorganisms.html" > microorganisms< / a > data set: "mo", "fullname", "status", "kingdom", "phylum", "class", "order", "family", "genus", "species", "subspecies", "rank", "ref", "oxygen_tolerance", "source", "lpsn", "lpsn_parent", "lpsn_renamed_to", "mycobank", "mycobank_parent", "mycobank_renamed_to", "gbif", "gbif_parent", "gbif_renamed_to", "prevalence", or "snomed". If < code > NULL< / code > , the raw values from < code > col_mo< / code > will be used without transformation.< / p > < / dd >
< dt id = "arg-n-for-each" > n_for_each< a class = "anchor" aria-label = "anchor" href = "#arg-n-for-each" > < / a > < / dt >
< dd > < p > an optional integer specifying the maximum number of rows to retain for each value of the selected property. If < code > NULL< / code > , all rows within the top < em > n< / em > groups will be included.< / p > < / dd >
< dt id = "arg-col-mo" > col_mo< a class = "anchor" aria-label = "anchor" href = "#arg-col-mo" > < / a > < / dt >
< dd > < p > A character string indicating the column in < code > x< / code > that contains microorganism names or codes. Defaults to the first column of class < code > < a href = "as.mo.html" > mo< / a > < / code > . Values will be coerced using < code > < a href = "as.mo.html" > as.mo()< / a > < / code > .< / p > < / dd >
< dt id = "arg--" > ...< a class = "anchor" aria-label = "anchor" href = "#arg--" > < / a > < / dt >
< dd > < p > Additional arguments passed on to < code > < a href = "mo_property.html" > mo_property()< / a > < / code > when < code > property< / code > is not < code > NULL< / code > .< / p > < / dd >
< / dl > < / div >
< div class = "section level2" >
< h2 id = "details" > Details< a class = "anchor" aria-label = "anchor" href = "#details" > < / a > < / h2 >
< p > This function is useful for preprocessing data before creating < a href = "antibiogram.html" > antibiograms< / a > or other analyses that require focused subsets of microbial data. For example, it can filter a data set to only include isolates from the top 10 species.< / p >
< / div >
< div class = "section level2" >
< h2 id = "see-also" > See also< a class = "anchor" aria-label = "anchor" href = "#see-also" > < / a > < / h2 >
< div class = "dont-index" > < p > < code > < a href = "mo_property.html" > mo_property()< / a > < / code > , < code > < a href = "as.mo.html" > as.mo()< / a > < / code > , < code > < a href = "antibiogram.html" > antibiogram()< / a > < / code > < / p > < / div >
< / div >
< div class = "section level2" >
< h2 id = "ref-examples" > Examples< a class = "anchor" aria-label = "anchor" href = "#ref-examples" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span class = "r-in" > < span > < span class = "co" > # filter to the top 3 species:< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > top_n_microorganisms< / span > < span class = "op" > (< / span > < span class = "va" > example_isolates< / span > ,< / span > < / span >
< span class = "r-in" > < span > n < span class = "op" > =< / span > < span class = "fl" > 3< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # A tibble: 1,015 × < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > date patient age gender ward mo PEN OXA FLC AMX < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494; font-style: italic;" > < date> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < dbl> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < mo> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < / span >
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< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 1< / span > 2002-01-02 A77334 65 F Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 2< / span > 2002-01-03 A77334 65 F Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 3< / span > 2002-01-14 462729 78 M Clinical < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > AURS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 4< / span > 2002-01-14 462729 78 M Clinical < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > AURS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 5< / span > 2002-01-19 738003 71 M Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 6< / span > 2002-01-19 738003 71 M Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 7< / span > 2002-02-03 481442 76 M ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > CONS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 8< / span > 2002-02-14 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > CONS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 9< / span > 2002-02-14 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > CONS < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 10< / span > 2002-02-21 A56499 64 M Clinical < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > CONS < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
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< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < sir> , AMP < sir> , TZP < sir> , CZO < sir> , FEP < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # CXM < sir> , FOX < sir> , CTX < sir> , CAZ < sir> , CRO < sir> , GEN < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TOB < sir> , AMK < sir> , KAN < sir> , TMP < sir> , SXT < sir> , NIT < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # FOS < sir> , LNZ < sir> , CIP < sir> , MFX < sir> , VAN < sir> , TEC < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TCY < sir> , TGC < sir> , DOX < sir> , ERY < sir> , CLI < sir> , AZM < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # IPM < sir> , MEM < sir> , MTR < sir> , CHL < sir> , COL < sir> , MUP < sir> , …< / span > < / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # filter to any species in the top 5 genera:< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > top_n_microorganisms< / span > < span class = "op" > (< / span > < span class = "va" > example_isolates< / span > ,< / span > < / span >
< span class = "r-in" > < span > n < span class = "op" > =< / span > < span class = "fl" > 5< / span > , property < span class = "op" > =< / span > < span class = "st" > "genus"< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # A tibble: 1,742 × < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > date patient age gender ward mo PEN OXA FLC AMX < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494; font-style: italic;" > < date> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < dbl> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < mo> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < / span >
2025-01-31 15:09:26 +00:00
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 1< / span > 2002-01-02 A77334 65 F Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 2< / span > 2002-01-03 A77334 65 F Clinical < span style = "color: #949494;" > B_< / span > ESCHR< span style = "color: #949494;" > _< / span > COLI < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 3< / span > 2002-01-07 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 4< / span > 2002-01-07 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 5< / span > 2002-01-13 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 6< / span > 2002-01-13 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 7< / span > 2002-01-14 462729 78 M Clinical < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > AURS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 8< / span > 2002-01-14 462729 78 M Clinical < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > AURS < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 9< / span > 2002-01-16 067927 45 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 10< / span > 2002-01-17 858515 79 F ICU < span style = "color: #949494;" > B_< / span > STPHY< span style = "color: #949494;" > _< / span > EPDR < span style = "color: #080808; background-color: #FFAFAF;" > R < / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #080808; background-color: #5FD7AF;" > S < / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
2025-01-27 21:16:06 +00:00
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < sir> , AMP < sir> , TZP < sir> , CZO < sir> , FEP < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # CXM < sir> , FOX < sir> , CTX < sir> , CAZ < sir> , CRO < sir> , GEN < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TOB < sir> , AMK < sir> , KAN < sir> , TMP < sir> , SXT < sir> , NIT < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # FOS < sir> , LNZ < sir> , CIP < sir> , MFX < sir> , VAN < sir> , TEC < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TCY < sir> , TGC < sir> , DOX < sir> , ERY < sir> , CLI < sir> , AZM < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # IPM < sir> , MEM < sir> , MTR < sir> , CHL < sir> , COL < sir> , MUP < sir> , …< / span > < / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # filter to the top 3 species in each of the top 5 genera:< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > top_n_microorganisms< / span > < span class = "op" > (< / span > < span class = "va" > example_isolates< / span > ,< / span > < / span >
< span class = "r-in" > < span > n < span class = "op" > =< / span > < span class = "fl" > 5< / span > , property < span class = "op" > =< / span > < span class = "st" > "genus"< / span > , n_for_each < span class = "op" > =< / span > < span class = "fl" > 3< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # A tibble: 1,497 × < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > date patient age gender ward mo PEN OXA FLC AMX < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494; font-style: italic;" > < date> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < dbl> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < chr> < / span > < span style = "color: #949494; font-style: italic;" > < mo> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < span style = "color: #949494; font-style: italic;" > < sir> < / span > < / span >
2025-01-31 15:09:26 +00:00
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 1< / span > 2002-02-21 4FC193 69 M Clinical < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FACM < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 2< / span > 2002-04-08 130252 78 M ICU < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FCLS < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 3< / span > 2002-06-23 798871 82 M Clinical < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FCLS < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 4< / span > 2002-06-23 798871 82 M Clinical < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FCLS < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 5< / span > 2003-04-20 6BC362 62 M ICU < span style = "color: #949494;" > B_< / span > ENTRC < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 6< / span > 2003-04-21 6BC362 62 M ICU < span style = "color: #949494;" > B_< / span > ENTRC < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 7< / span > 2003-08-13 F35553 52 M ICU < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FCLS < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 8< / span > 2003-09-05 F35553 52 M ICU < span style = "color: #949494;" > B_< / span > ENTRC < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 9< / span > 2003-09-05 F35553 52 M ICU < span style = "color: #949494;" > B_< / span > ENTRC< span style = "color: #949494;" > _< / span > FCLS < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #BCBCBC;" > 10< / span > 2003-09-28 1B0933 80 M Clinical < span style = "color: #949494;" > B_< / span > ENTRC < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < span style = "color: #B2B2B2;" > NA< / span > < / span >
2025-01-27 21:16:06 +00:00
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # ℹ < sir> , AMP < sir> , TZP < sir> , CZO < sir> , FEP < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # CXM < sir> , FOX < sir> , CTX < sir> , CAZ < sir> , CRO < sir> , GEN < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TOB < sir> , AMK < sir> , KAN < sir> , TMP < sir> , SXT < sir> , NIT < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # FOS < sir> , LNZ < sir> , CIP < sir> , MFX < sir> , VAN < sir> , TEC < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # TCY < sir> , TGC < sir> , DOX < sir> , ERY < sir> , CLI < sir> , AZM < sir> ,< / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > < span style = "color: #949494;" > # IPM < sir> , MEM < sir> , MTR < sir> , CHL < sir> , COL < sir> , MUP < sir> , …< / span > < / span >
< / code > < / pre > < / div >
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< / main > < aside class = "col-md-3" > < nav id = "toc" aria-label = "Table of contents" > < h2 > On this page< / h2 >
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< footer > < div class = "pkgdown-footer-left" >
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