2020-06-25 17:34:50 +02:00
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# ==================================================================== #
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# TITLE #
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2020-10-08 11:16:03 +02:00
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# Antimicrobial Resistance (AMR) Analysis for R #
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2020-06-25 17:34:50 +02:00
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# #
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# SOURCE #
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2020-07-08 14:48:06 +02:00
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# https://github.com/msberends/AMR #
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2020-06-25 17:34:50 +02:00
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# #
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# LICENCE #
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2020-12-27 00:30:28 +01:00
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# (c) 2018-2021 Berends MS, Luz CF et al. #
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2020-10-08 11:16:03 +02:00
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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2020-06-25 17:34:50 +02:00
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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2020-10-08 11:16:03 +02:00
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
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2020-06-25 17:34:50 +02:00
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# ==================================================================== #
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context("ab_from_text.R")
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test_that("ab_from_text works", {
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2020-07-02 21:12:52 +02:00
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skip_on_cran()
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2020-06-26 12:31:27 +02:00
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds")[[1]],
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as.ab("Amoxicillin"))
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2020-07-02 21:12:52 +02:00
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", thorough_search = TRUE)[[1]],
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as.ab("Amoxicillin"))
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", thorough_search = FALSE)[[1]],
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as.ab("Amoxicillin"))
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2020-06-26 12:31:27 +02:00
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", translate_ab = TRUE)[[1]],
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"Amoxicillin")
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2020-06-26 12:31:27 +02:00
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expect_identical(ab_from_text("administered amoxi/clav and cipro", collapse = ", ")[[1]],
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2020-07-01 16:21:36 +02:00
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"AMC, CIP")
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2020-07-01 11:07:01 +02:00
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", type = "dose")[[1]],
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500)
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expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", type = "admin")[[1]],
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"oral")
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2020-06-25 17:34:50 +02:00
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})
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