AMR/tests/testthat/test-guess_ab_col.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Data Analysis for R #
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# #
# SOURCE #
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# https://github.com/msberends/AMR #
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# #
# LICENCE #
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# (c) 2018-2021 Berends MS, Luz CF et al. #
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# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
context("guess_ab_col.R")
test_that("guess_ab_col works", {
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skip_on_cran()
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expect_equal(guess_ab_col(example_isolates, "amox"),
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"AMX")
expect_equal(guess_ab_col(example_isolates, "amoxicillin"),
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"AMX")
expect_equal(guess_ab_col(example_isolates, "J01AA07"),
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"TCY")
expect_equal(guess_ab_col(example_isolates, "tetracycline"),
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"TCY")
expect_equal(guess_ab_col(example_isolates, "TETR"),
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"TCY")
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df <- data.frame(AMP_ND10 = "R",
AMC_ED20 = "S")
expect_equal(guess_ab_col(df, "ampicillin"),
"AMP_ND10")
expect_equal(guess_ab_col(df, "J01CR02"),
"AMC_ED20")
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})