AMR/DESCRIPTION

Package: AMR
Version: 0.1.2
Date: 2018-03-27
Title: Antimicrobial Resistance Analysis
Authors@R: c(
    person(
        given = c("Matthijs", "S."),
        family = "Berends",
        email = "m.s.berends@umcg.nl",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0001-7620-1800")),
    person(
        given = c("Christian", "F."),
        family = "Luz",
        email = "c.f.luz@umcg.nl",
        role = c("aut", "ctb"),
        comment = c(ORCID = "0000-0001-5809-5995")),
    person(
        given = c("Erwin", "E.A."),
        family = "Hassing",
        email = "e.hassing@certe.nl",
        role = "ctb"))
Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)
    of microbial isolates, by using new S3 classes and applying EUCAST expert rules
    on antibiograms according to Leclercq (2013)
    <doi:10.1111/j.1469-0691.2011.03703.x>.
Depends: R (>= 3.0)
Imports: dplyr (>= 0.7.0), reshape2 (>= 1.4.0), xml2, rvest
Suggests: testthat
URL: https://cran.r-project.org/package=AMR
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1.9000
first commit 2018-02-21 11:52:31 +01:00			`Package: AMR`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`Version: 0.1.2`
add tests using testthat 2018-03-27 17:43:42 +02:00			`Date: 2018-03-27`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`Title: Antimicrobial Resistance Analysis`
first commit 2018-02-21 11:52:31 +01:00			`Authors@R: c(`
			`person(`
			`given = c("Matthijs", "S."),`
			`family = "Berends",`
			`email = "m.s.berends@umcg.nl",`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`role = c("aut", "cre"),`
			`comment = c(ORCID = "0000-0001-7620-1800")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Christian", "F."),`
			`family = "Luz",`
			`email = "c.f.luz@umcg.nl",`
Add ORCID identifier 2018-03-19 10:28:35 +01:00			`role = c("aut", "ctb"),`
			`comment = c(ORCID = "0000-0001-5809-5995")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Erwin", "E.A."),`
			`family = "Hassing",`
			`email = "e.hassing@certe.nl",`
			`role = "ctb"))`
			`Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`of microbial isolates, by using new S3 classes and applying EUCAST expert rules`
			`on antibiograms according to Leclercq (2013)`
			`<doi:10.1111/j.1469-0691.2011.03703.x>.`
first commit 2018-02-21 11:52:31 +01:00			`Depends: R (>= 3.0)`
fix tests 2018-03-27 17:58:46 +02:00			`Imports: dplyr (>= 0.7.0), reshape2 (>= 1.4.0), xml2, rvest`
add tests using testthat 2018-03-27 17:43:42 +02:00			`Suggests: testthat`
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive - Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore) - Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS - Renamed dataset `bactlist` to `microorganisms` 2018-03-23 14:46:02 +01:00			`URL: https://cran.r-project.org/package=AMR`
first commit 2018-02-21 11:52:31 +01:00			`BugReports: https://github.com/msberends/AMR/issues`
			`License: GPL-2 \| file LICENSE`
			`Encoding: UTF-8`
			`LazyData: true`
			`RoxygenNote: 6.0.1.9000`