AMR/R/globals.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
globalVariables(c('abname',
'antibiotics',
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'atc',
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'bactid',
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'C_chisq_sim',
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'cnt',
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'count',
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'counts',
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'cum_count',
'cum_percent',
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'date_lab',
'days_diff',
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'fctlvl',
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'first_isolate_row_index',
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'Freq',
'fullname',
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'genus',
'gramstain',
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'item',
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'key_ab',
'key_ab_lag',
'key_ab_other',
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'labs',
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'median',
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'mic',
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'MIC',
'microorganisms',
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'mocode',
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'molis',
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'n',
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'na.omit',
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'other_pat_or_mo',
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'Pasted',
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'patient_id',
'quantile',
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'real_first_isolate',
'septic_patients',
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'species',
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'umcg',
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'values',
'View',
'y',
'.'))