AMR/inst/tinytest/test-age.R

# ==================================================================== #
# TITLE                                                                #
# Antimicrobial Resistance (AMR) Data Analysis for R                   #
#                                                                      #
# SOURCE                                                               #
# https://github.com/msberends/AMR                                     #
#                                                                      #
# LICENCE                                                              #
# (c) 2018-2021 Berends MS, Luz CF et al.                              #
# Developed at the University of Groningen, the Netherlands, in        #
# collaboration with non-profit organisations Certe Medical            #
# Diagnostics & Advice, and University Medical Center Groningen.       # 
#                                                                      #
# This R package is free software; you can freely use and distribute   #
# it for both personal and commercial purposes under the terms of the  #
# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
# the Free Software Foundation.                                        #
# We created this package for both routine data analysis and academic  #
# research and it was publicly released in the hope that it will be    #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
#                                                                      #
# Visit our website for the full manual and a complete tutorial about  #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
# ==================================================================== #

expect_equal(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
                 reference = "2019-01-01"),
             c(39, 34, 29))

expect_equal(age(x = c("2019-01-01", "2019-04-01", "2019-07-01"),
                 reference = "2019-09-01",
                 exact = TRUE),
             c(0.6656393, 0.4191781, 0.1698630),
             tolerance = 0.001)

expect_error(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
                 reference = c("2019-01-01", "2019-01-01")))

expect_warning(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
                   reference = "1975-01-01"))

expect_warning(age(x = c("1800-01-01", "1805-01-01", "1810-01-01"),
                   reference = "2019-01-01"))

expect_equal(length(age(x = c("2019-01-01", NA), na.rm = TRUE)),
             1)


ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)

expect_equal(length(unique(age_groups(ages, 50))),
             2)
expect_equal(length(unique(age_groups(ages, c(50, 60)))),
             3)
expect_identical(class(age_groups(ages, "child")),
                 c("ordered", "factor"))

expect_identical(class(age_groups(ages, "elderly")),
                 c("ordered", "factor"))

expect_identical(class(age_groups(ages, "tens")),
                 c("ordered", "factor"))

expect_identical(class(age_groups(ages, "fives")),
                 c("ordered", "factor"))

expect_equal(length(age_groups(c(10, 20, 30, NA), na.rm = TRUE)),
             3)