AMR/.travis.yml

# Setting up R deps
language: r
jobs:
  include:
  - r: 3.1
    os: linux
    warnings_are_errors: false
  - r: 3.2
    os: linux
  - r: 3.2
    os: osx
  - r: 3.3
    os: linux
  - r: 3.3
    os: osx
  - r: 3.4
    os: linux
  - r: 3.4
    os: osx
  - r: release
    os: linux
  - r: release
    os: osx
  - r: devel
    os: linux
    warnings_are_errors: false
matrix:
  allow_failures:
    - r: 3.2
      os: osx
    - r: 3.3
      os: osx
    - r: 3.4
      os: osx
r_packages: covr
cache: packages
cran: https://cran.rstudio.com

install:
  - Rscript -e "install.packages(c('devtools', 'backports', 'clipr', 'curl', 'data.table', 'dplyr', 'hms', 'knitr', 'readr', 'rlang', 'rvest', 'xml2', 'covr', 'ggplot2', 'rmarkdown', 'testthat', 'tidyr'))"
  - if [ $TRAVIS_OS_NAME = osx ]; then Rscript -e "devtools::install_github('r-lib/rlang')"; fi

# postrun
after_success:
  - Rscript -e 'covr::codecov()'
notifications:
  email:
    recipients:
      - m.s.berends@umcg.nl
      # - c.f.luz@umcg.nl
    on_success: change
    on_failure: change
Update .travis.yml 2018-03-29 12:56:03 +02:00			`# Setting up R deps`
latest R version on both linux and macOS 2018-07-10 16:17:09 +02:00			`language: r`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`jobs:`
			`include:`
remove reshape2 dependency 2018-07-30 01:18:40 +02:00			`- r: 3.1`
			`os: linux`
travis update again 2018-07-30 01:22:50 +02:00			`warnings_are_errors: false`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`- r: 3.2`
get travis working again 2018-07-10 16:36:30 +02:00			`os: linux`
			`- r: 3.2`
			`os: osx`
			`- r: 3.3`
			`os: linux`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`- r: 3.3`
get travis working again 2018-07-10 16:36:30 +02:00			`os: osx`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`- r: 3.4`
get travis working again 2018-07-10 16:36:30 +02:00			`os: linux`
			`- r: 3.4`
			`os: osx`
			`- r: release`
			`os: linux`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`- r: release`
get travis working again 2018-07-10 16:36:30 +02:00			`os: osx`
			`- r: devel`
			`os: linux`
			`warnings_are_errors: false`
allow failure on macOS 2018-09-07 10:20:01 +02:00			`matrix:`
			`allow_failures:`
algorithm improvement 2018-09-14 10:31:21 +02:00			`- r: 3.2`
			`os: osx`
			`- r: 3.3`
			`os: osx`
			`- r: 3.4`
			`os: osx`
test R 3.1 to latest 2018-07-10 16:05:11 +02:00			`r_packages: covr`
fix Travis 2018-04-02 15:03:22 +02:00			`cache: packages`
new g.test, extra unit tests 2018-07-10 12:27:07 +02:00			`cran: https://cran.rstudio.com`
Test on Linux and Mac 2018-03-23 14:59:50 +01:00
rlang dep for macOS 2018-08-23 01:18:58 +02:00			`install:`
speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00			`- Rscript -e "install.packages(c('devtools', 'backports', 'clipr', 'curl', 'data.table', 'dplyr', 'hms', 'knitr', 'readr', 'rlang', 'rvest', 'xml2', 'covr', 'ggplot2', 'rmarkdown', 'testthat', 'tidyr'))"`
rlang dep for macOS 2018-08-23 01:18:58 +02:00			`- if [ $TRAVIS_OS_NAME = osx ]; then Rscript -e "devtools::install_github('r-lib/rlang')"; fi`

Update .travis.yml 2018-03-29 12:56:03 +02:00			`# postrun`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`after_success:`
removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00			`- Rscript -e 'covr::codecov()'`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`notifications:`
			`email:`
			`recipients:`
			`- m.s.berends@umcg.nl`
Update freq function 2018-05-22 16:34:22 +02:00			`# - c.f.luz@umcg.nl`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`on_success: change`
Update .travis.yml 2018-03-29 14:07:54 +02:00			`on_failure: change`