AMR/DESCRIPTION

Package: AMR
Version: 0.4.0
Date: 2018-10-01
Title: Antimicrobial Resistance Analysis
Authors@R: c(
    person(
        given = c("Matthijs", "S."),
        family = "Berends",
        email = "m.s.berends@umcg.nl",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0001-7620-1800")),
    person(
        given = c("Christian", "F."),
        family = "Luz",
        email = "c.f.luz@umcg.nl",
        role = c("aut", "rev"),
        comment = c(ORCID = "0000-0001-5809-5995")),
    person(
        given = c("Erwin", "E.A."),
        family = "Hassing",
        email = "e.hassing@certe.nl",
        role = "ctb"),
    person(
        given = "Corinna",
        family = "Glasner",
        email = "c.glasner@umcg.nl",
        role = "ths",
        comment = c(ORCID = "0000-0003-1241-1328")),
    person(
        given = c("Alex", "W."),
        family = "Friedrich",
        email = "alex.friedrich@umcg.nl",
        role = "ths",
        comment = c(ORCID = "0000-0003-4881-038X")),
    person(
        given = "Bhanu",
        family = "Sinha",
        email = "b.sinha@umcg.nl",
        role = "ths",
        comment = c(ORCID = "0000-0003-1634-0010")))
Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)
    of microbial isolates, by using new S3 classes and applying EUCAST expert rules
    on antibiograms according to Leclercq (2013)
    <doi:10.1111/j.1469-0691.2011.03703.x>.
Depends:
    R (>= 3.1.0)
Imports:
    backports,
    curl,
    data.table (>= 1.9.0),
    dplyr (>= 0.7.0),
    hms,
    knitr (>= 1.0.0),
    rlang (>= 0.2.0),
    rvest (>= 0.3.2),
    xml2 (>= 1.0.0)
Suggests:
    covr (>= 3.0.1),
    ggplot2,
    rmarkdown,
    rstudioapi,
    testthat (>= 1.0.2),
    tidyr
VignetteBuilder: knitr
URL: https://github.com/msberends/AMR
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
first commit 2018-02-21 11:52:31 +01:00			`Package: AMR`
0.4.0, just published on CRAN 2018-10-01 19:36:42 +02:00			`Version: 0.4.0`
authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00			`Date: 2018-10-01`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`Title: Antimicrobial Resistance Analysis`
first commit 2018-02-21 11:52:31 +01:00			`Authors@R: c(`
			`person(`
			`given = c("Matthijs", "S."),`
			`family = "Berends",`
			`email = "m.s.berends@umcg.nl",`
AppVeyor 2018-08-13 23:05:53 +02:00			`role = c("aut", "cre"),`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`comment = c(ORCID = "0000-0001-7620-1800")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Christian", "F."),`
			`family = "Luz",`
			`email = "c.f.luz@umcg.nl",`
AppVeyor 2018-08-13 23:05:53 +02:00			`role = c("aut", "rev"),`
Add ORCID identifier 2018-03-19 10:28:35 +01:00			`comment = c(ORCID = "0000-0001-5809-5995")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Erwin", "E.A."),`
			`family = "Hassing",`
			`email = "e.hassing@certe.nl",`
thesis advisors 2018-08-03 09:59:39 +02:00			`role = "ctb"),`
			`person(`
			`given = "Corinna",`
			`family = "Glasner",`
			`email = "c.glasner@umcg.nl",`
			`role = "ths",`
			`comment = c(ORCID = "0000-0003-1241-1328")),`
			`person(`
			`given = c("Alex", "W."),`
			`family = "Friedrich",`
			`email = "alex.friedrich@umcg.nl",`
AppVeyor 2018-08-13 23:05:53 +02:00			`role = "ths",`
thesis advisors 2018-08-03 09:59:39 +02:00			`comment = c(ORCID = "0000-0003-4881-038X")),`
			`person(`
			`given = "Bhanu",`
			`family = "Sinha",`
			`email = "b.sinha@umcg.nl",`
			`role = "ths",`
abname improvement, small fixes 2018-08-13 11:00:53 +02:00			`comment = c(ORCID = "0000-0003-1634-0010")))`
first commit 2018-02-21 11:52:31 +01:00			`Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`of microbial isolates, by using new S3 classes and applying EUCAST expert rules`
			`on antibiograms according to Leclercq (2013)`
			`<doi:10.1111/j.1469-0691.2011.03703.x>.`
update dependencies 2018-04-02 16:05:09 +02:00			`Depends:`
new ggplot enhancement 2018-08-11 21:30:00 +02:00			`R (>= 3.1.0)`
update dependencies 2018-04-02 16:05:09 +02:00			`Imports:`
Try to support older R versions 2018-04-19 14:10:57 +02:00			`backports,`
atc_groups 2018-06-19 10:05:38 +02:00			`curl,`
first inclusion of ITIS data 2018-09-24 23:33:29 +02:00			`data.table (>= 1.9.0),`
update dependencies 2018-04-02 16:05:09 +02:00			`dplyr (>= 0.7.0),`
dependencies 2018-08-23 22:05:17 +02:00			`hms,`
MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00			`knitr (>= 1.0.0),`
unit tests 2018-08-23 01:01:50 +02:00			`rlang (>= 0.2.0),`
dependencies 2018-08-23 22:05:17 +02:00			`rvest (>= 0.3.2),`
			`xml2 (>= 1.0.0)`
update dependencies 2018-04-02 16:05:09 +02:00			`Suggests:`
added vignette of freq 2018-05-09 11:44:46 +02:00			`covr (>= 3.0.1),`
dependencies 2018-08-23 22:05:17 +02:00			`ggplot2,`
addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00			`rmarkdown,`
freq: support for table 2018-07-09 14:02:58 +02:00			`rstudioapi,`
dependencies 2018-08-23 22:05:17 +02:00			`testthat (>= 1.0.2),`
			`tidyr`
added vignette of freq 2018-05-09 11:44:46 +02:00			`VignetteBuilder: knitr`
update dependencies 2018-04-02 16:05:09 +02:00			`URL: https://github.com/msberends/AMR`
first commit 2018-02-21 11:52:31 +01:00			`BugReports: https://github.com/msberends/AMR/issues`
			`License: GPL-2 \| file LICENSE`
			`Encoding: UTF-8`
			`LazyData: true`
new ggplot enhancement 2018-08-11 21:30:00 +02:00			`RoxygenNote: 6.1.0`