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163 new trade names, added ab_tradenames

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dr. M.S. (Matthijs) Berends
2018-08-29 12:27:37 +02:00
parent 972fc4f6c7
commit 029157b3be
20 changed files with 139 additions and 314 deletions
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6
man/ab_property.Rd
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@ -8,6 +8,7 @@
\alias{ab_trivial_nl}
\alias{ab_certe}
\alias{ab_umcg}
\alias{ab_tradenames}
\title{Property of an antibiotic}
\usage{
ab_property(x, property = "official")
@ -23,12 +24,17 @@ ab_trivial_nl(x)
ab_certe(x)
ab_umcg(x)
ab_tradenames(x)
}
\arguments{
\item{x}{a (vector of a) valid \code{\link{atc}} code or any text that can be coerced to a valid atc with \code{\link{as.atc}}}
\item{property}{one of the column names of one of the \code{\link{antibiotics}} data set, like \code{"atc"} and \code{"official"}}
}
\value{
A vector of values. In case of \code{ab_tradenames}, if \code{x} is of length one, a vector will be returned. Otherwise a \code{\link{list}}, with \code{x} as names.
}
\description{
Use these functions to return a specific property of an antibiotic from the \code{\link{antibiotics}} data set, based on their ATC code. Get such a code with \code{\link{as.atc}}.
}

3
man/abname.Rd
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@ -22,6 +22,9 @@ abname(abcode, from = c("guess", "atc", "certe", "umcg"),
\description{
Convert antibiotic codes to a (trivial) antibiotic name or ATC code, or vice versa. This uses the data from \code{\link{antibiotics}}.
}
\details{
\strong{The \code{\link{ab_property}} functions are faster and more concise}, but do not support concatenated strings, like \code{abname("AMCL+GENT"}.
}
\examples{
abname("AMCL")
# "Amoxicillin and beta-lactamase inhibitor"

8
man/antibiotics.Rd
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@ -3,8 +3,8 @@
\docType{data}
\name{antibiotics}
\alias{antibiotics}
\title{Dataset with 420 antibiotics}
\format{A data.frame with 420 observations and 18 variables:
\title{Dataset with 423 antibiotics}
\format{A data.frame with 423 observations and 18 variables:
\describe{
\item{\code{atc}}{ATC code, like \code{J01CR02}}
\item{\code{certe}}{Certe code, like \code{amcl}}
@ -13,7 +13,7 @@
\item{\code{official}}{Official name by the WHO, like \code{"Amoxicillin and beta-lactamase inhibitor"}}
\item{\code{official_nl}}{Official name in the Netherlands, like \code{"Amoxicilline met enzymremmer"}}
\item{\code{trivial_nl}}{Trivial name in Dutch, like \code{"Amoxicilline/clavulaanzuur"}}
\item{\code{trade_name}}{Trade name as used by many countries, used internally by \code{\link{as.atc}}}
\item{\code{trade_name}}{Trade name as used by many countries (a total of 294), used internally by \code{\link{as.atc}}}
\item{\code{oral_ddd}}{Defined Daily Dose (DDD), oral treatment}
\item{\code{oral_units}}{Units of \code{ddd_units}}
\item{\code{iv_ddd}}{Defined Daily Dose (DDD), parenteral treatment}
@ -32,7 +32,7 @@
antibiotics
}
\description{
A dataset containing all antibiotics with a J0 code, with their DDD's. Properties were downloaded from the WHO, see Source.
A dataset containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDD's. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.
}
\seealso{
\code{\link{microorganisms}}