fix website nav header (no-check)

.github/prehooks/pre-commit

@@ -1,101 +0,0 @@
-#!/bin/sh
-
-# ==================================================================== #
-# TITLE:                                                               #
-# AMR: An R Package for Working with Antimicrobial Resistance Data     #
-#                                                                      #
-# SOURCE CODE:                                                         #
-# https://github.com/msberends/AMR                                     #
-#                                                                      #
-# PLEASE CITE THIS SOFTWARE AS:                                        #
-# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C    #
-# (2022). AMR: An R Package for Working with Antimicrobial Resistance  #
-# Data. Journal of Statistical Software, 104(3), 1-31.                 #
-# https://doi.org/10.18637/jss.v104.i03                                #
-#                                                                      #
-# Developed at the University of Groningen and the University Medical  #
-# Center Groningen in The Netherlands, in collaboration with many      #
-# colleagues from around the world, see our website.                   #
-#                                                                      #
-# This R package is free software; you can freely use and distribute   #
-# it for both personal and commercial purposes under the terms of the  #
-# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
-# the Free Software Foundation.                                        #
-# We created this package for both routine data analysis and academic  #
-# research and it was publicly released in the hope that it will be    #
-# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
-#                                                                      #
-# Visit our website for the full manual and a complete tutorial about  #
-# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
-# ==================================================================== #
-
-echo "Running pre-commit hook..."
-
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-if command -v Rscript > /dev/null; then
-  if [ "$(Rscript -e 'cat(all(c('"'pkgload'"', '"'devtools'"', '"'dplyr'"') %in% rownames(installed.packages())))')" = "TRUE" ]; then
-    Rscript -e "source('data-raw/_pre_commit_hook.R')"
-    currentpkg=$(Rscript -e "cat(pkgload::pkg_name())")
-    echo "- Adding changed files in ./data-raw and ./man to this commit"
-    git add data-raw/*
-    git add man/*
-    git add R/sysdata.rda
-    git add NAMESPACE
-  else
-    echo "- R package 'pkgload', 'devtools', 'dplyr', or 'styler' not installed!"
-    currentpkg="your"
-  fi
-else
-  echo "- R is not available on your system!"
-  currentpkg="your"
-fi
-echo ""
-
-
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-echo "Updating semantic versioning and date..."
-
-# get tags from remote, and remove tags not on remote:
-git fetch origin --prune --prune-tags --quiet
-currenttagfull=$(git describe --tags --abbrev=0)
-currenttag=$(git describe --tags --abbrev=0 | sed 's/v//')
-# assume main branch to be 'main' or 'master', pick the right name:
-defaultbranch=$(git branch | cut -c 3- | grep -E '^master$|^main$')
-if [ "$currenttag" = "" ]; then
-  # there is no tag, so set tag to 0.0.1 and commit index to current count
-  currenttag="0.0.1"
-  currentcommit=$(git rev-list --count ${defaultbranch})
-  echo "- no git tags found, create one in format 'v(x).(y).(z)' - curently ${currentcommit} previous commits in '${defaultbranch}'"
-else
-  # there is a tag, so base version number on that
-  currentcommit=$(git rev-list --count ${currenttagfull}..${defaultbranch})
-  echo "- latest tag is '${currenttagfull}', with ${currentcommit} previous commits in '${defaultbranch}'"
-fi
-# combine tag (e.g. 1.2.3) and commit number (like 5) increased by 9000 to indicate beta version
-currentversion="$currenttag.$((currentcommit + 9001))" # results in e.g. 1.2.3.9005
-echo "- ${currentpkg} pkg version set to ${currentversion}"
-
-# set version number and date to DESCRIPTION file
-sed -i -- "s/^Version: .*/Version: ${currentversion}/" DESCRIPTION
-sed -i -- "s/^Date: .*/Date: $(date '+%Y-%m-%d')/" DESCRIPTION
-echo "- updated version number and date in ./DESCRIPTION"
-# remove leftover on macOS
-rm -f DESCRIPTION--
-# add to commit
-git add DESCRIPTION
-
-# set version number to NEWS file
-if [ -e "NEWS.md" ]; then
-  if [ "$currentpkg" = "your" ]; then
-    currentpkg=""
-  fi
-  sed -i -- "1s/.*/# ${currentpkg} ${currentversion}/" NEWS.md
-  echo "- updated version number in ./NEWS.md"
-  # remove leftover on macOS
-  rm -f NEWS.md--
-  # add to commit
-  git add NEWS.md
-else
-  echo "- no NEWS.md found!"
-fi
-echo ""