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(v1.3.0.9030) matching score update

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-09-26 16:26:01 +02:00
parent 9667c2994f
commit 050a9a04fb
33 changed files with 249 additions and 175 deletions
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4
tests/testthat/test-eucast_rules.R
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@ -72,7 +72,7 @@ test_that("EUCAST rules work", {
expect_equal(suppressWarnings(eucast_rules(a, "mo", info = FALSE)), b)
# piperacillin must be R in Enterobacteriaceae when tica is R
library(dplyr)
library(dplyr, warn.conflicts = FALSE)
expect_equal(suppressWarnings(
example_isolates %>%
mutate(TIC = as.rsi("R"),
@ -85,7 +85,7 @@ test_that("EUCAST rules work", {
as.character()),
"R")
# Azithromicin and Clarythromycin must be equal to Erythromycin
# Azithromycin and Clarythromycin must be equal to Erythromycin
a <- eucast_rules(data.frame(mo = example_isolates$mo,
ERY = example_isolates$ERY,
AZM = as.rsi("R"),