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(v2.1.1.9123) add EFF code to antibiotics data set

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dr. M.S. (Matthijs) Berends committed 2025-01-15 16:14:09 +01:00
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commit 08ddbaa930
32 files changed
+522 -461
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inst/tinytest/test-ab_selectors.R
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@@ -44,9 +44,12 @@ expect_equal(ncol(example_isolates[, glycopeptides(), drop = FALSE]), 2, toleran
expect_equal(ncol(example_isolates[, lincosamides(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, lipoglycopeptides(), drop = FALSE]), 0, tolerance = 0.5)
expect_equal(ncol(example_isolates[, macrolides(), drop = FALSE]), 2, tolerance = 0.5)
expect_equal(ncol(example_isolates[, nitrofurans(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, oxazolidinones(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, penicillins(), drop = FALSE]), 7, tolerance = 0.5)
expect_equal(ncol(example_isolates[, phenicols(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, polymyxins(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, rifamycins(), drop = FALSE]), 1, tolerance = 0.5)
expect_equal(ncol(example_isolates[, streptogramins(), drop = FALSE]), 0, tolerance = 0.5)
expect_equal(ncol(example_isolates[, quinolones(), drop = FALSE]), 2, tolerance = 0.5)
expect_equal(ncol(example_isolates[, tetracyclines(), drop = FALSE]), 3, tolerance = 0.5)