P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 17:07:54 +02:00
Code Releases Activity

Built site for AMR: 2.1.1.9002@c746176

Browse Source
This commit is contained in:
github-actions
2023-12-03 10:41:04 +00:00
parent 3440c43dc4
commit 09881c5781
102 changed files with 340 additions and 563 deletions
Download Patch File Download Diff File Expand all files Collapse all files

58
articles/MDR.html
View File

@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9001</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9002</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -401,19 +401,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 S I R I S I</span></span>
<span><span class="co">#&gt; 2 S R I I R I</span></span>
<span><span class="co">#&gt; 3 S I R R S I</span></span>
<span><span class="co">#&gt; 4 S S I R S I</span></span>
<span><span class="co">#&gt; 5 S R S I S S</span></span>
<span><span class="co">#&gt; 6 S I R I R R</span></span>
<span><span class="co">#&gt; 1 S S S R R I</span></span>
<span><span class="co">#&gt; 2 I S S S I S</span></span>
<span><span class="co">#&gt; 3 S R I I S S</span></span>
<span><span class="co">#&gt; 4 I I I S R R</span></span>
<span><span class="co">#&gt; 5 R S R I I R</span></span>
<span><span class="co">#&gt; 6 I R S S S R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -454,40 +454,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3233</td>
<td align="right">64.66%</td>
<td align="right">3233</td>
<td align="right">64.66%</td>
<td align="right">3206</td>
<td align="right">64.12%</td>
<td align="right">3206</td>
<td align="right">64.12%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">945</td>
<td align="right">18.90%</td>
<td align="right">4178</td>
<td align="right">83.56%</td>
<td align="right">1005</td>
<td align="right">20.10%</td>
<td align="right">4211</td>
<td align="right">84.22%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">446</td>
<td align="right">8.92%</td>
<td align="right">4624</td>
<td align="right">92.48%</td>
<td align="right">427</td>
<td align="right">8.54%</td>
<td align="right">4638</td>
<td align="right">92.76%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">275</td>
<td align="right">5.50%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
<td align="right">260</td>
<td align="right">5.20%</td>
<td align="right">4898</td>
<td align="right">97.96%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">101</td>
<td align="right">2.02%</td>
<td align="right">102</td>
<td align="right">2.04%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>