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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9001</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9002</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -210,42 +210,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 2 0.25 256 8 0.025 2 0.5 0.01 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.25 1 0.5 8 0.005 0.01 16 64 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 128 256 2 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 <=0.001 0.25 <=0.001 2 0.0625 64 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 128 <=0.001 128 64 0.025 <=0.001 0.005 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.125 <=0.001 16 0.0625 <=0.001 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 28 40 26 12 43 37 35 14 33 43 16 9 34 33 41 42 46 41 41 40 23 50 44 41 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 37 48 24 40 25 46 28 29 48 32 22 42 41 42 27 36 11 42 28 50 16 41 8 43</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I R I S R R R R S S S R R S R I S I I S I I I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S I S S S R R S S R S R R R S I S I R S R S R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 0.025 0.025 1 16 8 32 <=0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 8 0.005 2 8 0.5 32 64 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 0.025 0.125 0.125 1 16 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 4 0.5 16 0.002 32 0.01 64 1 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 0.025 0.0625 0.25 16 2 0.002 8 0.5 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 16 0.25 0.002 0.001 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 2 4 16 0.5 16 16 8 8 4 8 8 0.5 16 0.5 1 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 4 1 8 4 4 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 0.5 4 1 1 1 16 1 0.5 0.25 16 1 4 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 2 0.5 16 1 0.5 2 4 1 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 2 0.125 0.25 >=4 1 2 0.5 2 0.125 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.5 0.125 >=4 2 1 2 2 0.5 0.125 >=4 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.025 0.5 2 0.125 0.25 4 0.5 0.125 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 1 0.5 >=16 0.025 0.0625 0.5 1 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 0.125 1 0.25 0.025 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 42 24 10 21 20 40 18 45 26 22 35 22 11 43 30 48 8 43 16 36 32 41 34 32</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 36 50 50 46 42 47 48 43 31 42 50 44 49 39 29 46 44 47 20 48 12 10 47 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 12 14 16 12 12 12 13 14 16 12 11 13 12 12 15 12 12 17 17 14 17 15 13 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 12 14 11 12 15 16 13 14 13 17 15 14 15 13 15 16 16 15 11 11 16 11 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 17 27 19 22 19 27 19 21 21 19 24 20 20 27 27 22 20 18 24 19 24 17 19 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 16 22 26 23 26 20 19 15 15 24 23 23 18 16 17 23 27 21 26 22 24 23 26 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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