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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9135</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9136</small>
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@ -79,16 +79,16 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 521 × 4</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mo_group mo mo_group_name mo_name </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> B_ACNTB_BMNN-C B_ACNTB_BMNN Acinetobacter baumannii complex Acinetobacter ba…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> B_ACNTB_BMNN-C B_ACNTB_CLCC Acinetobacter baumannii complex Acinetobacter ca…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> B_ACNTB_BMNN-C B_ACNTB_LCTC Acinetobacter baumannii complex Acinetobacter di…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> B_ACNTB_BMNN-C B_ACNTB_NSCM Acinetobacter baumannii complex Acinetobacter no…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> B_ACNTB_BMNN-C B_ACNTB_PITT Acinetobacter baumannii complex Acinetobacter pi…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> B_ACNTB_BMNN-C B_ACNTB_SFRT Acinetobacter baumannii complex Acinetobacter se…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> B_BCTRD_FRGL-C B_BCTRD_FRGL Bacteroides fragilis complex Bacteroides frag…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> B_BCTRD_FRGL-C B_BCTRD_OVTS Bacteroides fragilis complex Bacteroides ovat…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> B_BCTRD_FRGL-C B_BCTRD_THTT Bacteroides fragilis complex Bacteroides thet…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> B_BCTRD_FRGL-C B_PHCCL_VLGT Bacteroides fragilis complex Bacteroides vulg…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN Acinetobacter baumannii complex Acinetobacter ba…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>CLCC Acinetobacter baumannii complex Acinetobacter ca…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>LCTC Acinetobacter baumannii complex Acinetobacter di…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>NSCM Acinetobacter baumannii complex Acinetobacter no…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>PITT Acinetobacter baumannii complex Acinetobacter pi…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>BMNN-C <span style="color: #949494;">B_</span>ACNTB<span style="color: #949494;">_</span>SFRT Acinetobacter baumannii complex Acinetobacter se…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL Bacteroides fragilis complex Bacteroides frag…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>OVTS Bacteroides fragilis complex Bacteroides ovat…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>THTT Bacteroides fragilis complex Bacteroides thet…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>PHCCL<span style="color: #949494;">_</span>VLGT Bacteroides fragilis complex Bacteroides vulg…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 511 more rows</span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># these are all species in the Bacteroides fragilis group, as per WHONET:</span></span></span>
@ -96,11 +96,11 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 5 × 4</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mo_group mo mo_group_name mo_name </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> B_BCTRD_FRGL-C B_BCTRD_FRGL Bacteroides fragilis complex Bacteroides fragilis </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> B_BCTRD_FRGL-C B_BCTRD_OVTS Bacteroides fragilis complex Bacteroides ovatus </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> B_BCTRD_FRGL-C B_BCTRD_THTT Bacteroides fragilis complex Bacteroides thetaiot…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> B_BCTRD_FRGL-C B_PHCCL_VLGT Bacteroides fragilis complex Bacteroides vulgatus </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> B_BCTRD_FRGL-C B_PRBCT_DSTS Bacteroides fragilis complex Parabacteroides dist…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL Bacteroides fragilis complex Bacteroides fragilis </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>OVTS Bacteroides fragilis complex Bacteroides ovatus </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>THTT Bacteroides fragilis complex Bacteroides thetaiot…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>PHCCL<span style="color: #949494;">_</span>VLGT Bacteroides fragilis complex Bacteroides vulgatus </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> <span style="color: #949494;">B_</span>BCTRD<span style="color: #949494;">_</span>FRGL-C <span style="color: #949494;">B_</span>PRBCT<span style="color: #949494;">_</span>DSTS Bacteroides fragilis complex Parabacteroides dist…</span>
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