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(v1.4.0.9032) auto-data guessing for functions

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dr. M.S. (Matthijs) Berends
2020-12-07 16:06:42 +01:00
parent fdf29e6c5b
commit 1bdb136b3a
38 changed files with 455 additions and 353 deletions
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12
vignettes/EUCAST.Rmd
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@ -47,7 +47,17 @@ oops
eucast_rules(oops, info = FALSE)
```
EUCAST rules can not only be used for correction, they can also be used for filling in known resistance and susceptibility based on results of other antimicrobials drugs. This process is called *interpretive reading* and is part of the `eucast_rules()` function as well:
A more convenient function is `mo_is_intrinsic_resistant()` that uses the same guideline, but allows to check for one or more specific microorganisms or antibiotics:
```{r, warning = FALSE, message = FALSE}
mo_is_intrinsic_resistant(c("Klebsiella", "Escherichia"),
"ampicillin")
mo_is_intrinsic_resistant("Klebsiella",
c("ampicillin", "kanamycin"))
```
EUCAST rules can not only be used for correction, they can also be used for filling in known resistance and susceptibility based on results of other antimicrobials drugs. This process is called *interpretive reading*, is basically a form of imputation, and is part of the `eucast_rules()` function as well:
```{r, warning = FALSE, message = FALSE}
data <- data.frame(mo = c("Staphylococcus aureus",