P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-03 16:39:37 +02:00
Code Releases Activity

Built site for AMR@2.1.1.9133: 9520977

Browse Source
This commit is contained in:
github-actions
2025-01-27 21:16:06 +00:00
parent 322b29a823
commit 20d0d4d3e5
93 changed files with 1017 additions and 1320 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
reference/export_ncbi_biosample.html
View File

@@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9125</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9133</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -54,13 +54,9 @@
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">export_ncbi_biosample</span><span class="op">(</span></span>
<span> <span class="va">x</span>,</span>
<span> filename <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">"biosample_"</span>, <span class="fu"><a href="https://rdrr.io/r/base/format.html" class="external-link">format</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span>, <span class="st">"%Y-%m-%d-%H%M%S"</span><span class="op">)</span>, <span class="st">".xlsx"</span><span class="op">)</span>,</span>
<span> type <span class="op">=</span> <span class="st">"pathogen MIC"</span>,</span>
<span> columns <span class="op">=</span> <span class="fu"><a href="https://tidyselect.r-lib.org/reference/where.html" class="external-link">where</a></span><span class="op">(</span><span class="va">is.mic</span><span class="op">)</span>,</span>
<span> save_as_xlsx <span class="op">=</span> <span class="cn">TRUE</span></span>
<span><span class="op">)</span></span></code></pre></div>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">export_ncbi_biosample</span><span class="op">(</span><span class="va">x</span>, filename <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">"biosample_"</span>, <span class="fu"><a href="https://rdrr.io/r/base/format.html" class="external-link">format</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> <span class="st">"%Y-%m-%d-%H%M%S"</span><span class="op">)</span>, <span class="st">".xlsx"</span><span class="op">)</span>, type <span class="op">=</span> <span class="st">"pathogen MIC"</span>,</span>
<span> columns <span class="op">=</span> <span class="fu"><a href="https://tidyselect.r-lib.org/reference/where.html" class="external-link">where</a></span><span class="op">(</span><span class="va">is.mic</span><span class="op">)</span>, save_as_xlsx <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">