P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 23:41:57 +02:00
Code Releases Activity

Built site for AMR@2.1.1.9133: 9520977

Browse Source
This commit is contained in:
github-actions
2025-01-27 21:16:06 +00:00
parent 322b29a823
commit 20d0d4d3e5
93 changed files with 1017 additions and 1320 deletions
Download Patch File Download Diff File Expand all files Collapse all files

48
reference/ggplot_sir.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9125</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9133</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -54,42 +54,18 @@
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ggplot_sir</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> position <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> x <span class="op">=</span> <span class="st">"antibiotic"</span>,</span>
<span> fill <span class="op">=</span> <span class="st">"interpretation"</span>,</span>
<span> facet <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> breaks <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1</span>, <span class="fl">0.1</span><span class="op">)</span>,</span>
<span> limits <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> translate_ab <span class="op">=</span> <span class="st">"name"</span>,</span>
<span> combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> minimum <span class="op">=</span> <span class="fl">30</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> nrow <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> colours <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>S <span class="op">=</span> <span class="st">"#3CAEA3"</span>, SI <span class="op">=</span> <span class="st">"#3CAEA3"</span>, I <span class="op">=</span> <span class="st">"#F6D55C"</span>, IR <span class="op">=</span> <span class="st">"#ED553B"</span>, R <span class="op">=</span></span>
<span> <span class="st">"#ED553B"</span><span class="op">)</span>,</span>
<span> datalabels <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> datalabels.size <span class="op">=</span> <span class="fl">2.5</span>,</span>
<span> datalabels.colour <span class="op">=</span> <span class="st">"grey15"</span>,</span>
<span> title <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> subtitle <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> caption <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> x.title <span class="op">=</span> <span class="st">"Antimicrobial"</span>,</span>
<span> y.title <span class="op">=</span> <span class="st">"Proportion"</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ggplot_sir</span><span class="op">(</span><span class="va">data</span>, position <span class="op">=</span> <span class="cn">NULL</span>, x <span class="op">=</span> <span class="st">"antibiotic"</span>,</span>
<span> fill <span class="op">=</span> <span class="st">"interpretation"</span>, facet <span class="op">=</span> <span class="cn">NULL</span>, breaks <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1</span>, <span class="fl">0.1</span><span class="op">)</span>,</span>
<span> limits <span class="op">=</span> <span class="cn">NULL</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> minimum <span class="op">=</span> <span class="fl">30</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, nrow <span class="op">=</span> <span class="cn">NULL</span>, colours <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>S</span>
<span> <span class="op">=</span> <span class="st">"#3CAEA3"</span>, SI <span class="op">=</span> <span class="st">"#3CAEA3"</span>, I <span class="op">=</span> <span class="st">"#F6D55C"</span>, IR <span class="op">=</span> <span class="st">"#ED553B"</span>, R <span class="op">=</span> <span class="st">"#ED553B"</span><span class="op">)</span>,</span>
<span> datalabels <span class="op">=</span> <span class="cn">TRUE</span>, datalabels.size <span class="op">=</span> <span class="fl">2.5</span>, datalabels.colour <span class="op">=</span> <span class="st">"grey15"</span>,</span>
<span> title <span class="op">=</span> <span class="cn">NULL</span>, subtitle <span class="op">=</span> <span class="cn">NULL</span>, caption <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> x.title <span class="op">=</span> <span class="st">"Antimicrobial"</span>, y.title <span class="op">=</span> <span class="st">"Proportion"</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">geom_sir</span><span class="op">(</span></span>
<span> position <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"antibiotic"</span>, <span class="st">"interpretation"</span><span class="op">)</span>,</span>
<span> fill <span class="op">=</span> <span class="st">"interpretation"</span>,</span>
<span> translate_ab <span class="op">=</span> <span class="st">"name"</span>,</span>
<span> minimum <span class="op">=</span> <span class="fl">30</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span></code></pre></div>
<span><span class="fu">geom_sir</span><span class="op">(</span>position <span class="op">=</span> <span class="cn">NULL</span>, x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"antibiotic"</span>, <span class="st">"interpretation"</span><span class="op">)</span>,</span>
<span> fill <span class="op">=</span> <span class="st">"interpretation"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>, minimum <span class="op">=</span> <span class="fl">30</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">