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(v1.4.0.9033) documentation update

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dr. M.S. (Matthijs) Berends
2020-12-08 12:37:25 +01:00
parent 1bdb136b3a
commit 2145f1d1ba
110 changed files with 839 additions and 576 deletions
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R/first_isolate.R
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@ -27,7 +27,7 @@
#'
#' Determine first (weighted) isolates of all microorganisms of every patient per episode and (if needed) per specimen type. To determine patient episodes not necessarily based on microorganisms, use [is_new_episode()] that also supports grouping with the `dplyr` package.
#' @inheritSection lifecycle Stable lifecycle
#' @param x a [data.frame] containing isolates. Can be omitted when used inside `dplyr` verbs, such as `filter()`, `mutate()` and `summarise()`.
#' @param x a [data.frame] containing isolates. Can be omitted when used inside `dplyr` verbs, such as [`filter()`][dplyr::filter()], [`mutate()`][dplyr::mutate()] and [`summarise()`][dplyr::summarise()].
#' @param col_date column name of the result date (or date that is was received on the lab), defaults to the first column with a date class
#' @param col_patient_id column name of the unique IDs of the patients, defaults to the first column that starts with 'patient' or 'patid' (case insensitive)
#' @param col_mo column name of the IDs of the microorganisms (see [as.mo()]), defaults to the first column of class [`mo`]. Values will be coerced using [as.mo()].