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(v1.4.0.9033) documentation update

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dr. M.S. (Matthijs) Berends
2020-12-08 12:37:25 +01:00
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@ -318,18 +318,18 @@ Unique: 2</p>
<div class="sourceCode" id="cb5"><pre class="downlit">
<span class="fu"><a href="https://rdrr.io/r/utils/head.html">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span>
<span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span>
<span class="co"># 1 S I R S R R</span>
<span class="co"># 2 R S S R I S</span>
<span class="co"># 3 I R I S R S</span>
<span class="co"># 4 I S S R S R</span>
<span class="co"># 5 R R S S R R</span>
<span class="co"># 6 S R I S S I</span>
<span class="co"># 1 S S R R R R</span>
<span class="co"># 2 R S S R S S</span>
<span class="co"># 3 S R R R S S</span>
<span class="co"># 4 S S S S S S</span>
<span class="co"># 5 R S R S R S</span>
<span class="co"># 6 S S R S S S</span>
<span class="co"># kanamycin</span>
<span class="co"># 1 R</span>
<span class="co"># 2 S</span>
<span class="co"># 3 S</span>
<span class="co"># 4 R</span>
<span class="co"># 5 R</span>
<span class="co"># 2 R</span>
<span class="co"># 3 R</span>
<span class="co"># 4 S</span>
<span class="co"># 5 S</span>
<span class="co"># 6 S</span></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb6"><pre class="downlit">
@ -361,40 +361,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3313</td>
<td align="right">66.26%</td>
<td align="right">3313</td>
<td align="right">66.26%</td>
<td align="right">3327</td>
<td align="right">66.54%</td>
<td align="right">3327</td>
<td align="right">66.54%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">631</td>
<td align="right">12.62%</td>
<td align="right">3944</td>
<td align="right">78.88%</td>
<td align="right">632</td>
<td align="right">12.64%</td>
<td align="right">3959</td>
<td align="right">79.18%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">575</td>
<td align="right">11.50%</td>
<td align="right">4519</td>
<td align="right">90.38%</td>
<td align="right">536</td>
<td align="right">10.72%</td>
<td align="right">4495</td>
<td align="right">89.90%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">275</td>
<td align="right">5.50%</td>
<td align="right">4794</td>
<td align="right">95.88%</td>
<td align="right">277</td>
<td align="right">5.54%</td>
<td align="right">4772</td>
<td align="right">95.44%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">206</td>
<td align="right">4.12%</td>
<td align="right">228</td>
<td align="right">4.56%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>