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@ -9,7 +9,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -133,7 +133,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<dt id="arg-ab-result">ab_result<a class="anchor" aria-label="anchor" href="#arg-ab-result"></a></dt>
<dd><p>antibiotic results to test against, must be one or more values of "S", "I", or "R"</p></dd>
<dd><p>antibiotic results to test against, must be one or more values of "S", "SDD", "I", or "R"</p></dd>
<dt id="arg-confidence-level">confidence_level<a class="anchor" aria-label="anchor" href="#arg-confidence-level"></a></dt>
@ -161,7 +161,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<dt id="arg-combine-si">combine_SI<a class="anchor" aria-label="anchor" href="#arg-combine-si"></a></dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant) - the default is <code>TRUE</code></p></dd>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S, SDD, and I must be merged into one, so the output only consists of S+SDD+I vs. R (susceptible vs. resistant) - the default is <code>TRUE</code></p></dd>
</dl></div>
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