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(v1.5.0.9010) MDRO vignette update, get_episode for < day

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dr. M.S. (Matthijs) Berends
2021-01-24 14:48:56 +01:00
parent 1a88caa119
commit 286eaa9699
52 changed files with 319 additions and 210 deletions
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man/as.rsi.Rd
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@ -47,7 +47,7 @@ is.rsi.eligible(x, threshold = 0.05)
uti = NULL,
conserve_capped_values = FALSE,
add_intrinsic_resistance = FALSE,
reference_data = rsi_translation
reference_data = AMR::rsi_translation
)
}
\arguments{
@ -57,7 +57,7 @@ is.rsi.eligible(x, threshold = 0.05)
\item{threshold}{maximum fraction of invalid antimicrobial interpretations of \code{x}, see \emph{Examples}}
\item{mo}{any (vector of) text that can be coerced to a valid microorganism code with \code{\link[=as.mo]{as.mo()}}, will be determined automatically if the \code{dplyr} package is installed}
\item{mo}{any (vector of) text that can be coerced to a valid microorganism code with \code{\link[=as.mo]{as.mo()}}, can be left empty to determine it automatically}
\item{ab}{any (vector of) text that can be coerced to a valid antimicrobial code with \code{\link[=as.ab]{as.ab()}}}