P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 08:52:15 +02:00
Code Releases Activity

(v1.7.1.9026) updated DDDs

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-08-19 23:43:02 +02:00
parent 1b62bab007
commit 2ab21b7af3
26 changed files with 266 additions and 219 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
man/atc_online.Rd
View File

@ -4,6 +4,7 @@
\alias{atc_online_property}
\alias{atc_online_groups}
\alias{atc_online_ddd}
\alias{atc_online_ddd_units}
\title{Get ATC Properties from WHOCC Website}
\source{
\url{https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/}
@ -20,9 +21,11 @@ atc_online_property(
atc_online_groups(atc_code, ...)
atc_online_ddd(atc_code, ...)
atc_online_ddd_units(atc_code, ...)
}
\arguments{
\item{atc_code}{a \link{character} or \link{character} vector with ATC code(s) of antibiotic(s)}
\item{atc_code}{a \link{character} (vector) with ATC code(s) of antibiotics, will be coerced with \code{\link[=as.ab]{as.ab()}} and \code{\link[=ab_atc]{ab_atc()}} internally if not a valid ATC code}
\item{property}{property of an ATC code. Valid values are \code{"ATC"}, \code{"Name"}, \code{"DDD"}, \code{"U"} (\code{"unit"}), \code{"Adm.R"}, \code{"Note"} and \code{groups}. For this last option, all hierarchical groups of an ATC code will be returned, see \emph{Examples}.}
@ -35,7 +38,7 @@ atc_online_ddd(atc_code, ...)
\item{...}{arguments to pass on to \code{atc_property}}
}
\description{
Gets data from the WHO to determine properties of an ATC (e.g. an antibiotic), such as the name, defined daily dose (DDD) or standard unit.
Gets data from the WHOCC website to determine properties of an Anatomical Therapeutic Chemical (ATC) (e.g. an antibiotic), such as the name, defined daily dose (DDD) or standard unit.
}
\details{
Options for argument \code{administration}:
@ -84,6 +87,7 @@ On our website \url{https://msberends.github.io/AMR/} you can find \href{https:/
if (requireNamespace("curl") && requireNamespace("rvest") && requireNamespace("xml2")) {
# oral DDD (Defined Daily Dose) of amoxicillin
atc_online_property("J01CA04", "DDD", "O")
atc_online_ddd(ab_atc("amox"))
# parenteral DDD (Defined Daily Dose) of amoxicillin
atc_online_property("J01CA04", "DDD", "P")