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@@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9036</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -111,15 +111,16 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.016 0.125 0.125 0.25 0.5 0.004 0.002 0.002 0.032 0.004 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.032 0.0005 0.5 1 0.016 0.008 2 0.125 0.25 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.032 1 0.008 0.004 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.008 0.016 0.25 0.5 0.5 1 0.002 0.002 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] 0.001 0.064 0.002 0.064 &lt;=0.0002 1 4 0.016 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [17] 0.008 8 0.25 0.5 0.5 0.032 4 0.008 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 0.004 </span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 47 20 36 18 44 43 25 28 26 44 36 42 8 28 44 31 29 49 30 28 39 49 25 49 48</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 39 47 20 36 18 44 43 25 28 26 44 36 42 8 28 44 31 29 49 30 28 39 49 25 49</span>
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'sir'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] R S R S R R S I I I S R R S I I S I I I S S R S S</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] I R S R S R R S I I I S R R S I I S I I I S S R S</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># add more skewedness, make more realistic by setting a bug and/or drug:</span></span></span>
<span class="r-in"><span><span class="va">disks</span> <span class="op">&lt;-</span> <span class="fu">random_disk</span><span class="op">(</span><span class="fl">100</span>, severity <span class="op">=</span> <span class="fl">2</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span>, ab <span class="op">=</span> <span class="st">"CIP"</span><span class="op">)</span></span></span>
@@ -132,9 +133,9 @@
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.004 4 0.032 16 0.016 16 0.001 0.0002 0.002 0.004 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.001 0.0005 0.0001 0.002 0.125 &gt;=64 0.004 0.0005 0.001 0.0002</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.0005 0.001 0.0005 0.004 0.032 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1 8 0.004 4 0.032 8 0.016 8 0.001 0.0002</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.002 0.004 0.001 0.0005 0.0001 0.002 0.125 &gt;=64 0.002 0.0005</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.001 0.0002 0.0005 0.001 0.0005</span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] &lt;=0.5 &lt;=0.5 &lt;=0.5 1 &lt;=0.5 &lt;=0.5 &lt;=0.5 &lt;=0.5 &lt;=0.5 &lt;=0.5 1 1 </span>