P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2024-12-24 18:46:14 +01:00
Code Releases Activity

Built site for AMR@2.1.1.9073: 2975697

Browse Source
This commit is contained in:
github-actions 2024-09-19 12:05:20 +00:00
parent fd917ad2bb
commit 2f239e59c4
156 changed files with 5846 additions and 190 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
404.html
View File

@ -33,7 +33,7 @@
<a class="navbar-brand me-2" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

BIN
AMR_intro.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 91 KiB

602
AMR_intro.svg Normal file
View File

File diff suppressed because one or more lines are too long
Side by Side

After

Width:  |  Height:  |  Size: 1.2 MiB

2
LICENSE-text.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

10
articles/AMR.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -95,7 +95,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 16 July 2024.</p>
generated on 19 September 2024.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@ -151,21 +151,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2024-07-16</td>
<td align="center">2024-09-19</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2024-07-16</td>
<td align="center">2024-09-19</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2024-07-16</td>
<td align="center">2024-09-19</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>

2
articles/EUCAST.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/MDR.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/PCA.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/WHONET.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

31
articles/datasets.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -84,7 +84,7 @@
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">16 July 2024</h4>
<h4 data-toc-skip class="date">19 September 2024</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/main/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="d-none name"><code>datasets.Rmd</code></div>
@ -116,7 +116,7 @@ column names:<br><em>mo</em>, <em>fullname</em>, <em>status</em>, <em>kingdom</e
<em>snomed</em>.</p>
<p>This data set is in R available as <code>microorganisms</code>, after
you load the <code>AMR</code> package.</p>
<p>It was last updated on 16 July 2024 12:51:57 UTC. Find more info
<p>It was last updated on 17 July 2024 12:29:55 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/microorganisms.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
@ -124,7 +124,7 @@ about the structure of this data set <a href="https://msberends.github.io/AMR/re
R Data Structure (RDS) file</a> (1.6 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/microorganisms.txt" class="external-link">tab-separated
text file</a> (15.9 MB)<br>
text file</a> (16 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/microorganisms.xlsx" class="external-link">Microsoft
Excel workbook</a> (7.8 MB)<br>
@ -155,15 +155,22 @@ all SNOMED codes as comma separated values.</p>
<h3 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a>
</h3>
<p>This data set contains the full microbial taxonomy of six kingdoms
from the List of Prokaryotic names with Standing in Nomenclature (LPSN)
and the Global Biodiversity Information Facility (GBIF):</p>
from the List of Prokaryotic names with Standing in Nomenclature (LPSN),
MycoBank, and the Global Biodiversity Information Facility (GBIF):</p>
<ul>
<li>Parte, AC <em>et al.</em> (2020). <strong>List of Prokaryotic names
with Standing in Nomenclature (LPSN) moves to the DSMZ.</strong>
International Journal of Systematic and Evolutionary Microbiology, 70,
5607-5612; . Accessed from <a href="https://lpsn.dsmz.de" class="external-link uri">https://lpsn.dsmz.de</a> on June 24th, 2024.</li>
<li>Vincent, R <em>et al</em> (2013). <strong>MycoBank gearing up for
new horizons.</strong> IMA Fungus, 4(2), 371-9; . Accessed from <a href="https://www.mycobank.org" class="external-link uri">https://www.mycobank.org</a>
on June 24th, 2024.</li>
<li>GBIF Secretariat (2023). GBIF Backbone Taxonomy. Checklist dataset .
Accessed from <a href="https://www.gbif.org" class="external-link uri">https://www.gbif.org</a> on June 24th, 2024.</li>
<li>Reimer, LC <em>et al.</em> (2022). <strong><em>BacDive</em> in 2022:
the knowledge base for standardized bacterial and archaeal
data.</strong> Nucleic Acids Res., 50(D1):D741-D74; . Accessed from <a href="https://bacdive.dsmz.de" class="external-link uri">https://bacdive.dsmz.de</a>
on July 16th, 2024.</li>
<li>Public Health Information Network Vocabulary Access and Distribution
System (PHIN VADS). US Edition of SNOMED CT from 1 September 2020. Value
Set Name ‘Microorganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href="https://phinvads.cdc.gov" class="external-link uri">https://phinvads.cdc.gov</a>
@ -422,13 +429,13 @@ Set Name ‘Microorganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a hre
<td align="center"></td>
<td align="center">GBIF</td>
<td align="center"></td>
<td align="center"></td>
<td align="center">776057</td>
<td align="center"></td>
<td align="center"></td>
<td align="center"></td>
<td align="center"></td>
<td align="center">12233256</td>
<td align="center"></td>
<td align="center">11286021</td>
<td align="center"></td>
<td align="center">1.0</td>
<td align="center"></td>
@ -448,7 +455,7 @@ column names:<br><em>ab</em>, <em>cid</em>, <em>name</em>, <em>group</em>, <em>a
<em>iv_ddd</em>, <em>iv_units</em>, and <em>loinc</em>.</p>
<p>This data set is in R available as <code>antibiotics</code>, after
you load the <code>AMR</code> package.</p>
<p>It was last updated on 14 June 2024 20:39:01 UTC. Find more info
<p>It was last updated on 19 September 2024 09:44:56 UTC. Find more info
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
<p><strong>Direct download links:</strong></p>
<ul>
@ -459,13 +466,13 @@ R Data Structure (RDS) file</a> (44 kB)<br>
text file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.xlsx" class="external-link">Microsoft
Excel workbook</a> (73 kB)<br>
Excel workbook</a> (75 kB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.feather" class="external-link">Apache
Feather file</a> (0.2 MB)<br>
Feather file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.parquet" class="external-link">Apache
Parquet file</a> (0 kB)<br>
Parquet file</a> (0.1 MB)<br>
</li>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/antibiotics.xpt" class="external-link">SAS
transport (XPT) file</a> (1.5 MB)<br>

2
articles/index.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/other_pkg.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/resistance_predict.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
articles/welcome_to_AMR.html
View File

@ -29,7 +29,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
authors.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

BIN
countries.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 78 KiB

BIN
countries_large.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 1.2 MiB

BIN
deps/bootstrap-5.3.1/fonts/1Ptug8zYS_SKggPNyC0ITw.woff2 vendored
View File

Binary file not shown.

BIN
deps/bootstrap-5.3.1/fonts/1Ptug8zYS_SKggPNyCAIT5lu.woff2 vendored
View File

Binary file not shown.

BIN
deps/bootstrap-5.3.1/fonts/1Ptug8zYS_SKggPNyCIIT5lu.woff2 vendored
View File

Binary file not shown.

BIN
deps/bootstrap-5.3.1/fonts/1Ptug8zYS_SKggPNyCMIT5lu.woff2 vendored
View File

Binary file not shown.

BIN
deps/bootstrap-5.3.1/fonts/1Ptug8zYS_SKggPNyCkIT5lu.woff2 vendored
View File

Binary file not shown.

BIN
endorsement_clsi_eucast.jpg Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 97 KiB

2
index.html
View File

@ -35,7 +35,7 @@
<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

6
lang_cs.svg Normal file
View File

@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg version="1.0" xmlns="http://www.w3.org/2000/svg" width="900" height="600">
<rect width="900" height="600" fill="#d7141a"/>
<rect width="900" height="300" fill="#fff"/>
<path d="M 450,300 0,0 V 600 z" fill="#11457e"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 275 B

1
lang_da.svg Normal file
View File

@ -0,0 +1 @@
<?xml version="1.0" encoding="UTF-8"?><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 37 28"><path fill="#c60c30" d="M0,0H37V28H0Z"/><path fill="#fff" d="M0,12H12V0H16V12H37V16H16V28H12V16H0Z"/></svg>
Side by Side

After

Width:  |  Height:  |  Size: 205 B

9
lang_de.svg Normal file
View File

@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<svg xmlns="http://www.w3.org/2000/svg" width="1000" height="600" viewBox="0 0 5 3">
<desc>Flag of Germany</desc>
<rect id="black_stripe" width="5" height="3" y="0" x="0" fill="#000"/>
<rect id="red_stripe" width="5" height="2" y="1" x="0" fill="#D00"/>
<rect id="gold_stripe" width="5" height="1" y="2" x="0" fill="#FFCE00"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 502 B

5
lang_el.svg Normal file
View File

@ -0,0 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="600" height="400" viewBox="0 0 27 18">
<rect fill="#0D5EAF" width="27" height="18"/>
<path fill="none" stroke-width="2" stroke="#FFF" d="M5,0V11 M0,5H10 M10,3H27 M10,7H27 M0,11H27 M0,15H27"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 284 B

16
lang_en.svg Normal file
View File

@ -0,0 +1,16 @@
<?xml version="1.0"?>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 60 30" width="1200" height="600">
<clipPath id="s">
<path d="M0,0 v30 h60 v-30 z"/>
</clipPath>
<clipPath id="t">
<path d="M30,15 h30 v15 z v15 h-30 z h-30 v-15 z v-15 h30 z"/>
</clipPath>
<g clip-path="url(#s)">
<path d="M0,0 v30 h60 v-30 z" fill="#012169"/>
<path d="M0,0 L60,30 M60,0 L0,30" stroke="#fff" stroke-width="6"/>
<path d="M0,0 L60,30 M60,0 L0,30" clip-path="url(#t)" stroke="#C8102E" stroke-width="4"/>
<path d="M30,0 v30 M0,15 h60" stroke="#fff" stroke-width="10"/>
<path d="M30,0 v30 M0,15 h60" stroke="#C8102E" stroke-width="6"/>
</g>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 641 B

406
lang_es.svg Normal file
View File

File diff suppressed because one or more lines are too long
Side by Side

After

Width:  |  Height:  |  Size: 59 KiB

6
lang_fi.svg Normal file
View File

@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="1800" height="1100">
<rect width="1800" height="1100" fill="#fff"/>
<rect width="1800" height="300" y="400" fill="#002F6C"/>
<rect width="300" height="1100" x="500" fill="#002F6C"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 274 B

2
lang_fr.svg Normal file
View File

@ -0,0 +1,2 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="900" height="600"><rect width="900" height="600" fill="#ED2939"/><rect width="600" height="600" fill="#fff"/><rect width="300" height="600" fill="#002395"/></svg>
Side by Side

After

Width:  |  Height:  |  Size: 249 B

6
lang_it.svg Normal file
View File

@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="1500" height="1000" viewBox="0 0 3 2">
<rect width="3" height="2" fill="#009246"/>
<rect width="2" height="2" x="1" fill="#fff"/>
<rect width="1" height="2" x="2" fill="#ce2b37"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 273 B

5
lang_ja.svg Normal file
View File

@ -0,0 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="900" height="600">
<rect fill="#fff" height="600" width="900"/>
<circle fill="#bc002d" cx="450" cy="300" r="180"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 209 B

5
lang_nl.svg Normal file
View File

@ -0,0 +1,5 @@
<svg xmlns="http://www.w3.org/2000/svg" width="900" height="600" viewBox="0 0 9 6">
<rect fill="#21468B" width="9" height="6"/>
<rect fill="#FFF" width="9" height="4"/>
<rect fill="#AE1C28" width="9" height="2"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 223 B

13
lang_no.svg Normal file
View File

@ -0,0 +1,13 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" version="1.1" viewBox="0 0 22 16">
<title>Flag of Norway</title>
<rect width="22" height="16" fill="#ba0c2f"/>
<g fill="#fff">
<rect width="4" height="16" x="6"/>
<rect width="22" height="4" y="6"/>
</g>
<g fill="#00205b">
<rect width="2" height="16" x="7"/>
<rect width="22" height="2" y="7"/>
</g>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 400 B

5
lang_pl.svg Normal file
View File

@ -0,0 +1,5 @@
<?xml version="1.0"?>
<svg xmlns="http://www.w3.org/2000/svg" width="640" height="400" viewBox="0 0 8 5">
<rect width="8" height="5" fill="#dc143c"/>
<rect width="8" height="2.5" fill="#fff"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 199 B

67
lang_pt.svg Normal file
View File

@ -0,0 +1,67 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="600" height="400">
<rect width="600" height="400" fill="#f00"/>
<rect width="240" height="400" fill="#060"/>
<g fill="#ff0" fill-rule="evenodd" stroke="#000" stroke-width="0.573" stroke-linecap="round" stroke-linejoin="round">
<path d="m318.24,262.04c-30.21-0.91-168.74-87.38-169.69-101.15l7.6496-12.757c13.741,19.966,155.36,104.06,169.27,101.08l-7.2299,12.823"/>
<path d="m154.59,146.4c-2.7101,7.2937,36.149,31.318,82.903,59.754,46.752,28.434,87.065,46.006,90.053,43.486,0.18256-0.32544,1.4701-2.5409,1.352-2.5232-0.56001,0.84402-1.9234,1.1104-4.0506,0.49741-12.631-3.6433-45.575-18.765-86.374-43.506-40.798-24.743-76.294-47.544-81.811-57.232-0.38363-0.67116-0.65702-1.8962-0.60146-2.8487l-0.13405-0.002-1.1747,2.0532-0.16139,0.32191h-0.00088zm164.36,116.04c-0.51238,0.92957-1.4675,0.96044-3.2816,0.76112-11.3-1.2506-45.589-17.925-86.162-42.213-47.21-28.26-86.2-54.01-81.97-60.74l1.1509-2.0346,0.22665,0.0706c-3.8037,11.405,76.948,57.578,81.702,60.522,46.724,28.947,86.115,45.851,89.601,41.458l-1.2682,2.181v-0.002z"/>
<path d="m240.17,169.23c30.237-0.23901,67.55-4.1319,89.023-12.69l-4.6265-7.5168c-12.692,7.0247-50.21,11.644-84.652,12.335-40.736-0.37483-69.49-4.1681-83.897-13.835l-4.3672,8.0045c26.484,11.207,53.623,13.587,88.52,13.703"/>
<path d="m330.44,156.71c-0.73904,1.1818-14.743,6.0113-35.373,9.5753-13.988,2.1325-32.234,3.9555-55.004,3.9776-21.633,0.0203-39.305-1.5196-52.684-3.3329-21.656-3.3955-32.833-8.1201-36.965-9.7896,0.39509-0.78581,0.64908-1.337,1.0301-2.0708,11.895,4.736,23.124,7.5918,36.279,9.6158,13.291,1.8,30.75,3.362,52.276,3.3417,22.664-0.0229,40.709-1.9844,54.616-4.0534,21.155-3.4122,32.711-7.8034,34.334-9.8425l1.494,2.5788h-0.002zm-4.0603-7.6226c-2.293,1.8415-13.718,5.8932-33.819,9.1034-13.415,1.9226-30.472,3.6433-52.265,3.6645-20.704,0.0203-37.619-1.375-50.485-3.2491-20.414-2.6661-31.279-7.4754-35.196-8.8776,0.3898-0.67381,0.78666-1.3423,1.1941-2.0135,3.0479,1.5346,13.533,5.7909,34.226,8.7224,12.72,1.8036,29.661,3.1477,50.262,3.1265,21.69-0.0221,38.553-1.7762,51.883-3.6883,20.205-2.7799,31.077-7.9472,32.728-9.241l1.4728,2.4509v0.002z"/>
<path d="m140.88,205.66c18.598,10.003,59.905,15.044,98.994,15.391,35.591,0.0564,81.958-5.5016,99.297-14.69l-0.47712-10.012c-5.4246,8.4773-55.113,16.609-99.206,16.276-44.093-0.3325-85.038-7.1429-98.687-15.959l0.0794,8.9914"/>
<path d="m340.12,204.22,0.00088,2.3874c-2.606,3.1159-18.946,7.8255-39.437,11.142-15.595,2.391-35.927,4.1945-61.262,4.1945-24.069,0-43.263-1.7163-58.148-4.0014-23.529-3.4264-38.579-9.4262-41.6-11.217l0.0132-2.7852c9.0748,6.0334,33.661,10.447,41.917,11.798,14.788,2.2701,33.868,3.9732,57.817,3.9732,25.216,0,45.434-1.7912,60.931-4.1663,14.701-2.1237,35.644-7.6465,39.767-11.324h0.00088zm0.01-8.4922,0.00088,2.3874c-2.606,3.1142-18.946,7.8237-39.437,11.14-15.595,2.391-35.927,4.1945-61.262,4.1945-24.069,0-43.263-1.7145-58.148-4.0014-23.529-3.4246-38.579-9.4245-41.6-11.216l0.0132-2.7852c9.0748,6.0325,33.661,10.447,41.917,11.796,14.788,2.2719,33.868,3.9758,57.817,3.9758,25.216,0,45.434-1.7921,60.931-4.169,14.701-2.1237,35.644-7.6465,39.767-11.324l0.00088,0.002z"/>
<path d="m239.79,260.32c-42.772-0.25489-79.421-11.659-87.16-13.544l5.6433,8.8344c13.67,5.7503,49.424,14.32,81.927,13.371,32.504-0.94809,60.91-3.466,80.928-13.211l5.7862-9.1555c-13.642,6.425-60.068,13.639-87.125,13.705"/>
<path stroke-width="0.55" d="m323.3,253.72c-0.85016,1.2991-1.7171,2.5823-2.5963,3.8294-9.4417,3.3293-24.319,6.8245-30.597,7.844-12.824,2.6423-32.665,4.594-50.274,4.6029-37.89-0.55474-68.905-7.9719-83.496-14.299l-1.1773-2.0241,0.19225-0.30427,1.9966,0.77435c25.948,9.2834,55.091,12.987,82.698,13.652,17.538,0.0617,35.095-2.01,49.292-4.5491,21.771-4.3621,30.574-7.65,33.275-9.1405l0.68701-0.38541h-0.00088zm5.0172-8.2753c0.022,0.0256,0.0441,0.0503,0.0653,0.0776-0.63585,1.0733-1.2911,2.1652-1.9622,3.2623-5.0357,1.8-18.702,5.7988-38.659,8.5893-13.149,1.7912-21.322,3.526-47.479,4.034-49.015-1.2471-80.75-10.831-88.289-13.195l-1.1174-2.1431c28.406,7.4154,57.422,12.592,89.408,13.121,23.931-0.50976,34.112-2.2719,47.152-4.0499,23.271-3.6186,34.996-7.4498,38.515-8.5558-0.0441-0.0635-0.0961-0.13053-0.15433-0.19932l2.5231-0.9428-0.002,0.002z"/>
<path d="m328.83,197.76c0.13873,28.137-14.26,53.386-25.858,64.525-16.408,15.759-38.163,25.896-63.569,26.363-28.37,0.52117-55.12-17.974-62.295-26.099-14.028-15.885-25.449-36.057-25.815-63.243,1.7376-30.709,13.793-52.1,31.268-66.769s40.743-21.813,60.121-21.302c22.358,0.59003,48.475,11.558,66.521,33.332,11.823,14.266,16.943,29.748,19.627,53.193zm-89.186-96.342c54.485,0,99.296,44.338,99.296,98.703,0,54.364-44.811,98.704-99.296,98.704s-98.924-44.339-98.924-98.704,44.439-98.703,98.924-98.703"/>
<path d="m239.91,101.08c54.534,0,99.011,44.483,99.011,99.022,0,54.538-44.478,99.02-99.011,99.02-54.534,0-99.011-44.481-99.011-99.02s44.478-99.022,99.011-99.022zm-96.832,99.0224c0,53.26,43.736,96.842,96.832,96.842,53.097,0,96.833-43.582,96.833-96.842,0-53.262-43.737-96.844-96.833-96.844s-96.832,43.584-96.832,96.844z"/>
<path d="m239.99,109.31c49.731,0,90.693,40.821,90.693,90.704,0,49.884-40.963,90.703-90.693,90.703s-90.693-40.819-90.693-90.703c0-49.883,40.964-90.704,90.693-90.704zm-88.515,90.7034c0,48.685,39.979,88.524,88.515,88.524s88.515-39.839,88.515-88.524c0-48.686-39.978-88.525-88.515-88.525-48.536,0-88.515,39.839-88.515,88.525z"/>
<path d="m243.98,100.68-8.48545,0,0.01,198.96,8.51455,0z"/>
<path d="m243.13,99.546h2.1598l0.0185,201.25h-2.1616l-0.0159-201.25zm-8.4213,0.0018h2.1766l0.003,201.25h-2.1783v-201.25z"/>
<path d="m338.99,203.935,0-7.3554-5.99-5.58-34-9-49-5-59,3-42,10-8.48,6.28,0,7.3572l21.48-9.637,51-8h49l36,4,25,6z"/>
<path d="m239.95,184.77c23.383-0.0432,46.07,2.2154,64.065,5.7194,18.569,3.7121,31.637,8.3556,36.105,13.571l-0.005,2.5823c-5.3884-6.4902-22.973-11.248-36.518-13.968-17.858-3.474-40.393-5.7168-63.647-5.6736-24.538,0.0459-47.387,2.3698-64.984,5.8032-14.12,2.8019-32.951,8.3679-35.302,13.858v-2.689c1.2911-3.8003,15.313-9.4792,34.984-13.417,17.729-3.4572,40.62-5.7415,65.302-5.7864zm0.01-8.4922c23.383-0.0423,46.07,2.2172,64.065,5.7194,18.569,3.7139,31.637,8.3556,36.105,13.571l-0.005,2.5823c-5.3884-6.4885-22.973-11.247-36.518-13.966-17.858-3.4757-40.393-5.7185-63.647-5.6736-24.538,0.0441-47.276,2.3698-64.875,5.8014-13.626,2.5832-33.226,8.3696-35.412,13.86v-2.6908c1.2911-3.7588,15.597-9.6414,34.985-13.417,17.729-3.4572,40.62-5.7397,65.302-5.7864z"/>
<path d="m239.48,132.96c36.849-0.18433,68.99,5.1523,83.695,12.685l5.3638,9.279c-12.781-6.888-47.456-14.05-89.005-12.979-33.854,0.20814-70.027,3.7271-88.176,13.41l6.4035-10.709c14.895-7.7241,50.022-11.643,81.72-11.684"/>
<path d="m239.97,140.62c21.017-0.0556,41.325,1.1298,57.476,4.0437,15.041,2.7993,29.385,7.0009,31.436,9.2604l1.5901,2.8099c-4.9881-3.257-17.401-6.8836-33.339-9.906-16.006-3.0083-36.3-4.0049-57.2-3.9502-23.722-0.0811-42.152,1.1712-57.969,3.9291-16.728,3.13-28.334,7.6015-31.197,9.7261l1.5583-2.9704c5.5631-2.8381,14.39-6.2592,29.223-8.9297,16.357-2.988,34.983-3.8841,58.423-4.0128h-0.00088zm-0.009-8.4843c20.113-0.0529,39.972,1.068,55.452,3.8506,12.209,2.3768,24.283,6.0872,28.704,9.3892l2.3256,3.6954c-3.9536-4.3947-18.836-8.5593-31.974-10.892-15.361-2.6494-34.395-3.698-54.508-3.8656-21.108,0.0591-40.615,1.352-55.752,4.1081-14.441,2.7481-23.76,6.0016-27.703,8.5425l2.0451-3.0868c5.4414-2.8646,14.232-5.4954,25.303-7.6465,15.249-2.7764,34.876-4.0358,56.108-4.0949z"/>
<path d="m289.15,241.26c-18.218-3.4008-36.469-3.8947-49.217-3.7447-61.407,0.71967-81.244,12.609-83.665,16.209l-4.5894-7.4815c15.634-11.332,49.073-17.687,88.587-17.037,20.518,0.33602,38.224,1.6986,53.119,4.5835l-4.2358,7.4727"/>
<path stroke-width="0.55" d="m239.58,236.46c17.082,0.25488,33.849,0.96044,50.033,3.9784l-1.172,2.069c-15.031-2.7746-31.055-3.8365-48.803-3.75-22.663-0.17727-45.585,1.9394-65.541,7.6668-6.2968,1.7524-16.721,5.8006-17.784,9.1458l-1.1659-1.9226c0.33601-1.9773,6.6363-6.081,18.414-9.3901,22.858-6.5458,44.239-7.6491,66.019-7.799v0.002zm0.77519-8.5963c17.698,0.33073,35.975,1.1492,53.74,4.6681l-1.2206,2.1537c-16.042-3.1847-31.369-4.2466-52.415-4.5702-22.735,0.0414-46.851,1.6625-68.778,8.0372-7.0791,2.062-19.297,6.5202-19.704,10.05l-1.1659-2.0655c0.26545-3.2059,10.842-7.388,20.358-10.156,22.096-6.4241,46.275-8.076,69.186-8.1174z"/>
<path d="M327.58,247.38,320.201,258.829,299,240,244,203,182,169,149.81,157.99,156.67,145.27,159,144l20,5,66,34,38,24,32,23,13,15z"/>
<path d="m148.65,158.29c5.646-3.8294,47.139,14.655,90.555,40.834,43.301,26.254,84.677,55.921,80.942,61.473l-1.2285,1.9323-0.56354,0.4445c0.12083-0.0864,0.74345-0.84755-0.0609-2.906-1.8449-6.0704-31.195-29.491-79.894-58.895-47.475-28.309-87.041-45.371-90.997-40.494l1.247-2.3892h-0.00089zm180.44,88.927c3.57-7.052-34.916-36.044-82.632-64.272-48.813-27.666-83.994-43.951-90.42-39.095l-1.4278,2.5991c-0.0124,0.14287,0.052-0.17727,0.35364-0.4101,1.1685-1.0195,3.1052-0.95074,3.9792-0.96662,11.065,0.16581,42.667,14.709,87.006,40.128,19.428,11.315,82.071,51.491,81.832,62.789,0.0168,0.97102,0.0803,1.1712-0.28485,1.6519l1.5936-2.4236v-0.002z"/>
</g>
<g>
<path fill="#fff" stroke="#000" stroke-width="0.67037" d="m180.6,211.01c0,16.271,6.6628,30.987,17.457,41.742,10.815,10.778,25.512,17.579,41.809,17.579,16.381,0,31.247-6.6525,42.016-17.389,10.769-10.735,17.443-25.552,17.446-41.88h-0.002v-79.189l-118.74-0.14111,0.0123,79.278h0.002z"/>
<path fill="#f00" stroke="#000" stroke-width="0.50734" d="m182.82,211.12v0.045c0,15.557,6.4414,29.724,16.775,40.009,10.354,10.305,24.614,16.712,40.214,16.712,15.681,0,29.912-6.3606,40.222-16.626,10.308-10.265,16.697-24.433,16.699-40.044h-0.002v-76.826l-113.84-0.0185-0.0697,76.748m91.022-53.747,0.004,48.891-0.0414,5.1717h0.00088c0,1.3608-0.082,2.9122-0.24076,4.2333-0.92512,7.7294-4.4801,14.467-9.7451,19.708-6.1636,6.1357-14.671,9.9413-24.047,9.9413-9.327,0-17.639-3.9379-23.829-10.1-6.3497-6.32-10.03-14.986-10.03-23.947l-0.0132-54.023,67.94,0.12259,0.002,0.002z"/>
<g id="castle3">
<g id="castle" fill="#ff0" stroke="#000" stroke-width="0.5">
<path stroke="none" d="m190.19,154.43c0.13493-5.521,4.0524-6.828,4.0806-6.8474,0.0282-0.0185,4.2314,1.4076,4.2173,6.8986l-8.2978-0.0512"/>
<path d="m186.81,147.69-0.68172,6.3447,4.1406,0.009c0.0397-5.2493,3.9739-6.1225,4.0691-6.1031,0.0891-0.005,3.9889,1.1606,4.0929,6.1031h4.1511l-0.74962-6.3932-15.022,0.0379v0.002z"/>
<path d="m185.85,154.06h16.946c0.35717,0,0.64908,0.35277,0.64908,0.78404,0,0.43039-0.29191,0.78141-0.64908,0.78141h-16.946c-0.35717,0-0.64908-0.35102-0.64908-0.78141,0-0.43127,0.29191-0.78404,0.64908-0.78404z"/>
<path d="m192.01,154.03c0.0185-3.3126,2.2621-4.2501,2.2736-4.2483,0.00088,0,2.3423,0.96661,2.3609,4.2483h-4.6344"/>
<path d="m186.21,145.05h16.245c0.34218,0,0.62263,0.31839,0.62263,0.70468,0,0.38717-0.28045,0.70467-0.62263,0.70467h-16.245c-0.34218,0-0.62263-0.31573-0.62263-0.70467,0-0.38629,0.28045-0.70468,0.62263-0.70468z"/>
<path d="m186.55,146.47h15.538c0.32719,0,0.59529,0.31662,0.59529,0.70379,0,0.38805-0.2681,0.70467-0.59529,0.70467h-15.538c-0.32719,0-0.59529-0.31662-0.59529-0.70467,0-0.38717,0.2681-0.70379,0.59529-0.70379z"/>
<path d="m191.57,135.88,1.2267,0.002v0.87136h0.89513v-0.89076l1.2567,0.004v0.88723h0.89778v-0.89076h1.2576l-0.002,2.0117c0,0.31574-0.25398,0.52035-0.54854,0.52035h-4.4113c-0.29633,0-0.56972-0.23724-0.5706-0.52652l-0.003-1.9879h0.00088z"/>
<path d="m196.19,138.57,0.27691,6.4514-4.3028-0.0159,0.28486-6.4523,3.741,0.0168"/>
<path id="cp1" d="m190.94,141.56,0.13141,3.4775-4.1256,0.002,0.11641-3.4793h3.8786-0.00089z"/>
<use xlink:href="#cp1" x="10.609"/>
<path id="cp2" d="m186.3,139.04,1.1994,0.003v0.87224h0.8775v-0.89253l1.2294,0.004v0.889h0.87926v-0.89253l1.2302,0.002-0.002,2.0117c0,0.31398-0.2487,0.51859-0.5362,0.51859h-4.3169c-0.28926,0-0.55824-0.23548-0.55913-0.52564l-0.003-1.9888h0.00088z"/>
<use xlink:href="#cp2" x="10.609"/>
<path fill="#000" stroke="none" d="m193.9,140.61c-0.0265-0.62706,0.87661-0.63411,0.86603,0v1.5364h-0.866v-1.536"/>
<path id="cp3" fill="#000" stroke="none" d="m188.57,142.84c-0.003-0.6059,0.83693-0.61824,0.82635,0v1.1871h-0.826v-1.187"/>
<use xlink:href="#cp3" x="10.641"/>
</g>
<use xlink:href="#castle" y="46.3198"/>
<use xlink:href="#castle" transform="matrix(0.70460892,-0.70959585,0.70959585,0.70460892,-35.341459,275.10898)"/>
</g>
<use xlink:href="#castle" x="45.7138"/>
<use xlink:href="#castle3" transform="matrix(-1,0,0,1,479.79195,0)"/>
<g id="quina" fill="#fff">
<path fill="#039" d="m232.636,202.406v0.005c0,2.2119,0.84927,4.2272,2.2118,5.6894,1.3652,1.4667,3.2454,2.3777,5.302,2.3777,2.0672,0,3.9439-0.90487,5.3029-2.3654,1.3581-1.4587,2.2021-3.47219,2.2021-5.693v-10.768l-14.992-0.0123-0.0273,10.766"/>
<circle cx="236.074" cy="195.735" r="1.486"/>
<circle cx="244.392" cy="195.742" r="1.486"/>
<circle cx="240.225" cy="199.735" r="1.486"/>
<circle cx="236.074" cy="203.916" r="1.486"/>
<circle cx="244.383" cy="203.905" r="1.486"/>
</g>
<use xlink:href="#quina" y="-26.016"/>
<use xlink:href="#quina" x="-20.799"/>
<use xlink:href="#quina" x="20.745"/>
<use xlink:href="#quina" y="25.784"/>
</g>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 13 KiB

6
lang_ro.svg Normal file
View File

@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="600" height="400" viewBox="0 0 3 2">
<rect width="3" height="2" x="0" y="0" fill="#002B7F"/>
<rect width="2" height="2" x="1" y="0" fill="#FCD116"/>
<rect width="1" height="2" x="2" y="0" fill="#CE1126"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 297 B

1
lang_ru.svg Normal file
View File

@ -0,0 +1 @@
<?xml version="1.0" encoding="UTF-8"?><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 9 6" width="900" height="600"><rect fill="#fff" width="9" height="3"/><rect fill="#d52b1e" y="3" width="9" height="3"/><rect fill="#0039a6" y="2" width="9" height="2"/></svg>
Side by Side

After

Width:  |  Height:  |  Size: 265 B

1
lang_sv.svg Normal file
View File

@ -0,0 +1 @@
<?xml version="1.0" encoding="UTF-8"?><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 16 10"><path fill="#006aa7" d="M0,0H16V10H0Z"/><path fill="#fecc00" d="M0,4H5V0H7V4H16V6H7V10H5V6H0Z"/></svg>
Side by Side

After

Width:  |  Height:  |  Size: 200 B

5
lang_tr.svg Normal file
View File

@ -0,0 +1,5 @@
<svg xmlns="http://www.w3.org/2000/svg" width="1200" height="800" viewBox="0 -30000 90000 60000">
<title>Flag of Turkey</title>
<path fill="#e30a17" d="m0-30000h90000v60000H0z"/>
<path fill="#fff" d="m41750 0 13568-4408-8386 11541V-7133l8386 11541zm925 8021a15000 15000 0 1 1 0-16042 12000 12000 0 1 0 0 16042z"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 324 B

4
lang_uk.svg Normal file
View File

@ -0,0 +1,4 @@
<svg xmlns="http://www.w3.org/2000/svg" width="1200" height="800">
<rect width="1200" height="800" fill="#005BBB"/>
<rect width="1200" height="400" y="400" fill="#FFD500"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 182 B

12
lang_zh.svg Normal file
View File

@ -0,0 +1,12 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="900" height="600" viewBox="0 0 30 20">
<defs>
<path id="s" d="M0,-1 0.587785,0.809017 -0.951057,-0.309017H0.951057L-0.587785,0.809017z" fill="#FFFF00"/>
</defs>
<rect width="30" height="20" fill="#EE1C25"/>
<use xlink:href="#s" transform="translate(5,5) scale(3)"/>
<use xlink:href="#s" transform="translate(10,2) rotate(23.036243)"/>
<use xlink:href="#s" transform="translate(12,4) rotate(45.869898)"/>
<use xlink:href="#s" transform="translate(12,7) rotate(69.945396)"/>
<use xlink:href="#s" transform="translate(10,9) rotate(20.659808)"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 688 B

223
logo_certe.svg Normal file
View File

@ -0,0 +1,223 @@
<?xml version="1.0" encoding="utf-8"?>
<!-- Generator: Adobe Illustrator 25.2.3, SVG Export Plug-In . SVG Version: 6.00 Build 0) -->
<svg version="1.1" id="Layer_1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
viewBox="0 0 149.3 61.5" style="enable-background:new 0 0 149.3 61.5;" xml:space="preserve">
<style type="text/css">
.st0{fill:#DDBADA;}
.st1{fill:#FFE600;}
.st2{fill:#E04883;}
.st3{fill:#01617E;}
.st4{fill:#FFFFFF;}
.st5{fill:none;}
.st6{fill:#8B9934;}
</style>
<path class="st0" d="M8.6,39.7l1.4,0.1c1.3,0,2.6-0.1,3.9-0.3c0.2-0.1,0.5-0.2,0.8-0.2h0.1l0.2-0.1l0.6-0.2l0.4-0.1
c1.5-1.9,2.2-4.2,2.2-6.6c0-2.3-1-4.6-2.7-6.1c-1.9-0.3-3.7-0.5-5.6-0.5c-1.4,0-2.8,0.2-4.2,0.5c-0.3,0.1-0.6,0.1-1,0.1v12.9
c0.4,0,0.8,0,1.2,0.1C6.7,39.4,7.6,39.6,8.6,39.7z"/>
<path class="st1" d="M40,43c-3.7-1.8-15,2.6-19.2,3.7c-3.6,1-9.9,4.5-16.3,4.3v8.8h37.8C42.2,53.3,43.1,44.5,40,43z"/>
<path class="st2" d="M35.5,42.2c-5-3-13.6-0.5-10.5,7.4c0,0-3.2,3.2-1.4,5.8c-2,0.9-3.7,2.5-4.8,4.4h19.6
C40.4,53.3,39.9,44.8,35.5,42.2z"/>
<path class="st3" d="M42.6,58.4c0,0,2.2-0.6,1.8-2.4c-0.2-1-0.9-1.9-1.8-2.3c1.1-0.4,1.8-1.5,1.8-2.7c-0.2-2-2.5-2.9-2.5-2.9
s2.1-1.6,1.8-3.5c-0.3-1.2-1.3-2-2.5-2.1c0.7-0.9,2.5-1.3-0.1-4.2c0.2-0.3,0.4-0.6,0.5-0.9c1-2.7-3-8-6.7-5.3c0,0-4.3-0.1-2.5,3
c-1.1,0-2.1,0.4-2.9,1.1c-0.7,0.9-0.8,2-0.4,3c0,0-2.2-1.1-3.4-0.1s-0.5,3.3-0.5,3.3s-1.8-1.5-3.5-0.7s-1,3.2-1,3.2s-1.5-2-3.4-1.2
c-1.4,0.5-2.3,1.9-2.2,3.4c-0.1-0.4-0.5-2.2-3-2.2c-1.2-0.1-2.3,0.7-2.5,1.8c0-0.7-0.4-1.7-2.4-1.8c-0.9-0.1-1.9,0-2.7,0.5V56
c0.8-0.3,1.4-0.9,1.7-1.7c0,0,1.1,4.3,3.9,0.2c0.3,1.2,1.5,1.9,2.6,1.6c0,0,0,0,0,0c2.9-0.5,2.7-2.4,2.7-2.4
c0.5,1.2,1.7,1.8,2.9,1.5c1.4-0.1,2.4-1.3,2.2-2.7c0-0.2-0.1-0.4-0.1-0.6c0,0,1.8,2.2,3.9,1.1c2.3-1.3,1.1-3,0.8-3.5
c0.4,0.4,1.9,1.9,3.7,0.9c2.1-1.1,0.6-3.3,0.6-3.3s2.2,1.6,3.7,0.9s0.6-3.2,0.6-3.2c0.4,0.4,1,0.6,1.6,0.6l-0.2,1.2
c-0.1,2.7,1.8,3.1,1.8,3.1c-1.5,0.4-2.6,1.7-2.6,3.3c0,1.8,2.7,2.4,2.7,2.4s-2.9,1.1-2.3,3.7c0,0.2,0.1,0.4,0.2,0.6h9.5
C44,59.1,43.3,58.6,42.6,58.4z"/>
<path class="st0" d="M14.4,50c4.7-0.7,9.9-2.2,13.7-5.2c1.9-1.7,3.6-3.6,5.1-5.6c0.8-0.9,1.7-1.7,2.7-2.4c2.1-1.4,3.5-0.4,5,1.2
c0.2,0.2,0.6-0.1,0.5-0.3c-1.8-3.7-5.5-1.7-7.6,0.4c-1.8,1.7-3.2,3.8-5.1,5.4c-2.3,1.9-4.9,3.3-7.8,4.2c-5.2,1.7-10.8,2.3-16.3,1.8
v0.9C7.8,50.5,11.1,50.4,14.4,50z"/>
<path class="st3" d="M65.9,10.6c2.4,0.1,4.7,1,6.4,2.8l-3,3.4c-0.9-0.9-2-1.4-3.3-1.4c-2.5,0-4.6,2.3-4.6,6.1s1.8,6.1,4.5,6.1
c1.4,0,2.8-0.6,3.7-1.7l3,3.4c-1.7,2-4.2,3.1-6.8,3.1c-5.5,0-10.1-3.5-10.1-10.7S60.5,10.6,65.9,10.6z"/>
<path class="st3" d="M75.5,11H89v4.6h-8V19h6.8v4.6H81v3.7h8.3V32H75.5V11z"/>
<path class="st3" d="M104.6,32l-3.6-7h-2.1v7h-5.5V11h7.9c4.5,0,8.4,1.6,8.4,6.8c0.2,2.5-1.2,4.9-3.4,6.1l4.5,8.2H104.6z M98.9,20.5
h2c2.2,0,3.3-1,3.3-2.8s-1.2-2.4-3.3-2.4h-2V20.5z"/>
<path class="st3" d="M117,15.7h-5.5V11h16.6v4.6h-5.5V32H117V15.7z"/>
<path class="st3" d="M131.2,11h14v4.6h-8.5V19h6.8v4.6h-6.8v3.7h8.4V32h-14L131.2,11z"/>
<path class="st3" d="M59.7,38.6v3.6c0,0.1-0.1,0.2-0.2,0.2h-0.3c-0.1,0-0.2-0.1-0.2-0.2v-3.6c-0.1-0.3-0.4-0.4-0.6-0.4
c-0.2,0-0.3,0.2-0.4,0.4v3.6c0,0.1-0.1,0.2-0.2,0.2h-0.3c-0.1,0-0.2-0.1-0.2-0.2v-3.6c-0.1-0.3-0.4-0.4-0.6-0.4
c-0.2,0-0.3,0.2-0.4,0.4v3.6c0,0.1-0.1,0.2-0.2,0.2h-0.3c-0.1,0-0.2-0.1-0.2-0.2v-3.6c0-0.6,0.5-1.2,1.1-1.2c0.3,0,0.6,0.1,0.9,0.4
c0.4-0.5,1.2-0.5,1.6-0.1C59.6,38,59.8,38.3,59.7,38.6L59.7,38.6z"/>
<path class="st3" d="M61.6,38.1v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2v0.3c0,0.1-0.1,0.2-0.2,0.2h-0.9v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2v0.3
c0,0.1-0.1,0.2-0.2,0.2h-1.2c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3h1.2c0.1,0,0.2,0.1,0.2,0.2V38
c0,0.1-0.1,0.2-0.2,0.2L61.6,38.1z"/>
<path class="st3" d="M66.2,38.6v2.6c0,0.6-0.5,1.2-1.1,1.2c0,0,0,0,0,0h-0.8c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3H65
C65.7,37.5,66.2,38,66.2,38.6z M65.6,38.6c0-0.3-0.2-0.5-0.5-0.5h-0.5v3.7H65c0.3,0,0.5-0.2,0.5-0.5V38.6z"/>
<path class="st3" d="M68.1,42.2c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0H68
c0.1,0,0.2,0.1,0.2,0.2v0V42.2z"/>
<path class="st3" d="M71,39v-0.3c-0.1-0.3-0.3-0.5-0.6-0.4c-0.2,0-0.4,0.2-0.4,0.4c0,0.1,0,0.1,0,0.2l1.4,1.8
c0.2,0.3,0.2,0.3,0.2,0.6c0.1,0.6-0.4,1.2-1,1.3c-0.6,0.1-1.2-0.4-1.3-1c0-0.1,0-0.1,0-0.2v-0.3c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0.1,0.3,0.3,0.5,0.6,0.4c0.2,0,0.4-0.2,0.4-0.4c0-0.1,0-0.1,0-0.2l-1.4-1.8c-0.2-0.3-0.2-0.3-0.2-0.6
c-0.1-0.6,0.4-1.2,1-1.3c0.6-0.1,1.2,0.4,1.3,1c0,0.1,0,0.1,0,0.2V39c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3C71,39.1,71,39.1,71,39
C71,39,71,39,71,39z"/>
<path class="st3" d="M74.4,39v-0.3c0.1-0.3-0.1-0.5-0.4-0.6c-0.3-0.1-0.5,0.1-0.6,0.4c0,0.1,0,0.1,0,0.2v2.6
c-0.1,0.3,0.1,0.5,0.4,0.6c0.3,0.1,0.5-0.1,0.6-0.4c0-0.1,0-0.1,0-0.2v-0.4c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3c0.1,0,0.2,0.1,0.2,0.2v0
v0.4c0.1,0.6-0.4,1.2-1,1.3c-0.6,0.1-1.2-0.4-1.3-1c0-0.1,0-0.1,0-0.2v-2.7c-0.1-0.6,0.4-1.2,1-1.3c0.6-0.1,1.2,0.4,1.3,1
c0,0.1,0,0.1,0,0.2V39c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3C74.5,39.1,74.4,39.1,74.4,39L74.4,39z"/>
<path class="st3" d="M78.6,37.6v4.6c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-2h-1v2c0,0.1-0.1,0.2-0.2,0.2l0,0
h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3c0.1,0,0.2,0.1,0.2,0.2v0v2h1v-2c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
C78.5,37.5,78.6,37.5,78.6,37.6L78.6,37.6z"/>
<path class="st3" d="M80.5,38.1v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.9v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2
v0v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-1.2c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3h1.2c0.1,0,0.2,0.1,0.2,0.2v0V38
c0,0.1-0.1,0.2-0.2,0.2l0,0L80.5,38.1z"/>
<path class="st3" d="M87,38.6v2.6c0,0.6-0.5,1.2-1.1,1.2c0,0,0,0,0,0H85c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3h0.8
C86.5,37.5,87,38,87,38.6z M86.4,38.6c0-0.3-0.2-0.5-0.5-0.5h-0.5v3.7h0.5c0.3,0,0.5-0.2,0.5-0.5V38.6z"/>
<path class="st3" d="M88.9,42.2c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0V42.2z"/>
<path class="st3" d="M92.5,38.6v3.6c0,0.1-0.1,0.2-0.2,0.2l0,0H92c-0.1,0-0.2-0.1-0.2-0.2v0v-2h-1v2c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3
c-0.1,0-0.2-0.1-0.2-0.2v0v-3.6c0.1-0.6,0.6-1.1,1.3-1C92.1,37.6,92.5,38.1,92.5,38.6L92.5,38.6z M91.9,38.6
c-0.1-0.3-0.4-0.4-0.6-0.4c-0.2,0-0.3,0.2-0.4,0.4v1h1V38.6z"/>
<path class="st3" d="M95.5,39v-0.3c-0.1-0.3-0.3-0.5-0.6-0.4c-0.2,0-0.4,0.2-0.4,0.4v2.7c-0.1,0.3,0.1,0.5,0.4,0.6
c0.3,0.1,0.5-0.1,0.6-0.4c0-0.1,0-0.1,0-0.2v-1h-0.3c-0.1,0-0.2-0.1-0.2-0.2v-0.3c0-0.1,0.1-0.2,0.2-0.2l0,0h0.8
c0.1,0,0.2,0.1,0.2,0.2v0v1.5c0,0.6-0.5,1.2-1.2,1.2s-1.2-0.5-1.2-1.2v-2.7c0-0.6,0.5-1.2,1.2-1.2s1.2,0.5,1.2,1.2l0,0V39
c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3C95.5,39.1,95.5,39.1,95.5,39L95.5,39z"/>
<path class="st3" d="M99.7,38.6v3.6c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-3.6c-0.1-0.3-0.4-0.4-0.6-0.4
c-0.2,0-0.3,0.2-0.4,0.4v3.6c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v-3.6c0-0.6,0.5-1.2,1.2-1.2S99.7,38,99.7,38.6
L99.7,38.6L99.7,38.6z"/>
<path class="st3" d="M103.3,38.6v2.6c0,0.6-0.5,1.2-1.2,1.2s-1.2-0.5-1.2-1.2v-2.6c0-0.6,0.5-1.2,1.2-1.2S103.3,38,103.3,38.6
L103.3,38.6z M102.6,38.6c-0.1-0.3-0.4-0.4-0.6-0.4c-0.2,0-0.3,0.2-0.4,0.4v2.6c-0.1,0.3,0.1,0.6,0.4,0.6c0.3,0.1,0.6-0.1,0.6-0.4
c0-0.1,0-0.2,0-0.3V38.6z"/>
<path class="st3" d="M106.1,39v-0.3c0-0.3-0.2-0.5-0.5-0.5l0,0c-0.3,0-0.5,0.2-0.5,0.5c0,0,0,0,0,0c0,0.1,0,0.1,0,0.2l1.4,1.8
c0.2,0.3,0.2,0.3,0.2,0.6c0.1,0.6-0.4,1.2-1,1.3c-0.6,0.1-1.2-0.4-1.3-1c0-0.1,0-0.1,0-0.2v-0.3c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0,0.3,0.2,0.5,0.5,0.5c0,0,0,0,0,0c0.3,0,0.5-0.2,0.5-0.5l0,0c0-0.1,0-0.1,0-0.2l-1.4-1.9
c-0.2-0.3-0.2-0.3-0.2-0.6c-0.1-0.6,0.4-1.2,1-1.3c0.6-0.1,1.2,0.4,1.3,1c0,0.1,0,0.1,0,0.2V39c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3
C106.2,39.1,106.1,39.1,106.1,39z"/>
<path class="st3" d="M109.7,37.6V38c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.4v4.1c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0
v-4.2H108c-0.1,0-0.2-0.1-0.2-0.2v0v-0.3c0-0.1,0.1-0.2,0.2-0.2l0,0h1.5C109.6,37.5,109.7,37.5,109.7,37.6
C109.7,37.6,109.7,37.6,109.7,37.6z"/>
<path class="st3" d="M111.5,42.2c0,0.1-0.1,0.2-0.2,0.2l0,0H111c-0.1,0-0.2-0.1-0.2-0.2v0v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0V42.2z"/>
<path class="st3" d="M113.4,38.1v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.9v1.5h0.9
c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-1.2c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3h1.2
c0.1,0,0.2,0.1,0.2,0.2v0V38c0,0.1-0.1,0.2-0.2,0.2l0,0L113.4,38.1z"/>
<path class="st3" d="M118.1,39.1c0,0.3-0.1,0.7-0.4,0.9c0.2,0.2,0.4,0.5,0.4,0.8v1.5c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3
c-0.1,0-0.2-0.1-0.2-0.2v0v-1.5c0-0.3-0.2-0.5-0.5-0.5c0,0,0,0,0,0h-0.5v2c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0
v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3c0.1,0,0.2,0.1,0.2,0.2v0v2h0.5c0.3,0,0.5-0.2,0.5-0.5v-1.5c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0L118.1,39.1z"/>
<path class="st3" d="M124.2,39.3v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.5v2.5c0,0.1-0.1,0.2-0.2,0.2l0,0h-1c-0.6,0-1.2-0.5-1.2-1.2v-1
c0-0.3,0.1-0.6,0.4-0.8c-0.2-0.2-0.4-0.5-0.4-0.8c0-0.6,0.5-1.1,1.2-1.2h0.3c0.1,0,0.2,0.1,0.2,0.2v0V38c0,0.1-0.1,0.2-0.2,0.2l0,0
h-0.3c-0.3-0.1-0.5,0.1-0.6,0.4s0.1,0.5,0.4,0.6c0.1,0,0.1,0,0.2,0h0.5v-0.5c0-0.1,0.1-0.2,0.2-0.2h0.3c0.1,0,0.2,0.1,0.2,0.2v0.5
h0.5C124.1,39.1,124.2,39.2,124.2,39.3C124.2,39.3,124.2,39.3,124.2,39.3z M122.9,39.7h-0.5c-0.3,0-0.5,0.2-0.5,0.5v1
c0,0.3,0.2,0.5,0.5,0.5c0,0,0,0,0,0h0.5V39.7z"/>
<path class="st3" d="M129.6,38.6v3.6c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-2h-1v2c0,0.1-0.1,0.2-0.2,0.2l0,0
h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-3.6c0-0.6,0.5-1.2,1.1-1.2C129.1,37.5,129.6,38,129.6,38.6L129.6,38.6L129.6,38.6z M129,38.6
c0-0.3-0.2-0.5-0.5-0.5c-0.3,0-0.5,0.2-0.5,0.5c0,0,0,0,0,0v1h1L129,38.6z"/>
<path class="st3" d="M133.2,38.6v2.6c0,0.6-0.5,1.2-1.1,1.2c0,0,0,0,0,0h-0.8c-0.2,0-0.3-0.1-0.3-0.3v-4.3c0-0.2,0.1-0.3,0.3-0.3
l0,0h0.8C132.7,37.5,133.2,38,133.2,38.6z M132.6,38.6c0-0.3-0.2-0.5-0.5-0.5h-0.5v3.7h0.5c0.3,0,0.5-0.2,0.5-0.5V38.6z"/>
<path class="st3" d="M136.8,37.6v3.1c0,0.2-0.1,0.4-0.2,0.6l-0.5,1c0,0-0.1,0.1-0.1,0.1h-0.6c-0.1,0-0.1,0-0.1-0.1l-0.5-1
c-0.1-0.2-0.2-0.4-0.2-0.6v-3.1c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3c0.1,0,0.2,0.1,0.2,0.2v0v3.1c0,0.1,0,0.1,0,0.2l0.5,0.9l0.5-0.9
c0-0.1,0-0.1,0-0.2v-3.1c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3C136.6,37.5,136.7,37.5,136.8,37.6C136.8,37.6,136.8,37.6,136.8,37.6z"/>
<path class="st3" d="M138.7,42.2c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3c-0.1,0-0.2-0.1-0.2-0.2v0v-4.6c0-0.1,0.1-0.2,0.2-0.2l0,0h0.3
c0.1,0,0.2,0.1,0.2,0.2v0V42.2z"/>
<path class="st3" d="M140.6,38.1v1.5h0.9c0.1,0,0.2,0.1,0.2,0.2v0v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.9v1.5h0.9c0.1,0,0.2,0,0.2,0.1
c0,0,0,0.1,0,0.1v0.3c0,0.1-0.1,0.2-0.2,0.2l0,0h-1.2c-0.2,0-0.3-0.1-0.3-0.3c0,0,0,0,0,0v-4.3c0-0.2,0.1-0.3,0.3-0.3l0,0h1.2
c0.1,0,0.2,0.1,0.2,0.2v0V38c0,0.1-0.1,0.2-0.2,0.2l0,0L140.6,38.1z"/>
<path class="st3" d="M144.5,39v-0.3c0.1-0.3-0.1-0.5-0.4-0.6c-0.3-0.1-0.5,0.1-0.6,0.4c0,0.1,0,0.1,0,0.2c0,0.1,0,0.1,0,0.2l1.4,1.8
c0.2,0.3,0.2,0.3,0.2,0.6c0.1,0.6-0.4,1.2-1,1.3c-0.6,0.1-1.2-0.4-1.3-1c0-0.1,0-0.1,0-0.2v-0.3c0-0.1,0.1-0.2,0.1-0.2h0.3
c0.1,0,0.2,0.1,0.2,0.2v0v0.3c-0.1,0.3,0.1,0.5,0.4,0.6c0.3,0.1,0.5-0.1,0.6-0.4c0-0.1,0-0.1,0-0.2c0-0.1,0-0.1,0-0.2l-1.4-1.8
c-0.2-0.3-0.2-0.3-0.2-0.6c-0.1-0.6,0.4-1.2,1-1.3c0.6-0.1,1.2,0.4,1.3,1c0,0.1,0,0.1,0,0.2V39c0,0.1-0.1,0.2-0.2,0.2l0,0h-0.3
C144.6,39.2,144.5,39.1,144.5,39C144.5,39,144.5,39,144.5,39z"/>
<path class="st3" d="M68,51.8l1.4-2.1h-1.2V49h2.3v0.5l-1.4,2.1h1.4v0.7H68V51.8z"/>
<path class="st3" d="M72.5,49h2.2v0.8h-1.3v0.5h1.1V51h-1.1v0.6h1.3v0.7h-2.2V49z"/>
<path class="st3" d="M77,49h0.9v1.2l0,0l0.8-1.2h1l-1,1.4l1.2,2h-1l-0.8-1.3l-0.3,0.5v0.8h-0.9L77,49z"/>
<path class="st3" d="M81.8,49h2.2v0.8h-1.2v0.5h1.1V51h-1.1v0.6H84v0.7h-2.3V49z"/>
<path class="st3" d="M88,52.3l-0.6-1.1h-0.3v1.1h-0.9V49h1.3c0.7,0,1.3,0.2,1.3,1.1c0,0.4-0.2,0.8-0.5,1l0.7,1.3L88,52.3z
M87.1,50.5h0.3c0.4,0,0.5-0.2,0.5-0.4s-0.2-0.4-0.5-0.4h-0.3V50.5z"/>
<path class="st3" d="M93.2,49h0.9l0.3,1.5c0.1,0.4,0.2,0.7,0.2,1.1l0,0c0.1-0.4,0.2-0.7,0.2-1.1l0.4-1.5h0.9l-1,3.4h-1.1L93.2,49z"
/>
<path class="st3" d="M98,50.7c-0.1-0.9,0.6-1.6,1.4-1.7s1.6,0.6,1.7,1.4c0,0.1,0,0.2,0,0.3c0.1,0.9-0.5,1.7-1.3,1.8
c-0.9,0.1-1.7-0.5-1.8-1.3C98,50.9,98,50.8,98,50.7z M100.2,50.7c0-0.6-0.2-1-0.7-1s-0.7,0.3-0.7,1s0.2,1,0.7,1
S100.2,51.3,100.2,50.7z"/>
<path class="st3" d="M103.1,50.7c-0.1-0.9,0.6-1.6,1.4-1.7s1.6,0.6,1.7,1.4c0,0.1,0,0.2,0,0.3c0.1,0.9-0.5,1.7-1.3,1.8
c-0.9,0.1-1.7-0.5-1.8-1.3C103.1,50.9,103.1,50.8,103.1,50.7z M105.4,50.7c0-0.6-0.2-1-0.7-1s-0.7,0.3-0.7,1s0.2,1,0.7,1
S105.4,51.3,105.4,50.7z"/>
<path class="st3" d="M110.2,52.3l-0.5-1.1h-0.3v1.1h-0.9V49h1.2c0.7,0,1.3,0.2,1.3,1.1c0,0.4-0.2,0.8-0.5,1l0.7,1.3L110.2,52.3z
M109.3,50.5h0.3c0.4,0,0.5-0.2,0.5-0.4s-0.2-0.4-0.5-0.4h-0.3V50.5z"/>
<path class="st3" d="M115.7,51.8l1.4-2.1h-1.3V49h2.3v0.5l-1.4,2.1h1.4v0.7h-2.4V51.8z"/>
<path class="st3" d="M120.1,50.7c-0.1-0.9,0.5-1.6,1.4-1.7s1.6,0.5,1.7,1.4c0,0.1,0,0.2,0,0.4c0.1,0.9-0.5,1.6-1.4,1.7
s-1.6-0.5-1.7-1.4C120.1,50.9,120.1,50.8,120.1,50.7z M122.3,50.7c0-0.6-0.2-1-0.7-1s-0.7,0.3-0.7,1s0.2,1,0.7,1
S122.3,51.3,122.3,50.7z"/>
<path class="st3" d="M127.2,52.3l-0.6-1.1h-0.3v1.1h-0.9V49h1.3c0.7,0,1.3,0.2,1.3,1.1c0,0.4-0.2,0.8-0.5,1l0.7,1.3L127.2,52.3z
M126.2,50.5h0.3c0.3,0,0.5-0.2,0.5-0.4s-0.2-0.4-0.5-0.4h-0.3V50.5z"/>
<path class="st3" d="M131.7,49c0.4,0,0.8,0.2,1.1,0.4l-0.5,0.5c-0.2-0.1-0.4-0.2-0.6-0.2c-0.5,0-0.8,0.4-0.8,1s0.3,1,0.9,1
c0.1,0,0.2,0,0.3-0.1v-0.5h-0.5v-0.7h1.3V52c-0.3,0.3-0.7,0.4-1.2,0.4c-0.9,0.1-1.6-0.6-1.7-1.5c0-0.1,0-0.2,0-0.2
C130,49.8,130.7,49,131.7,49C131.6,49,131.7,49,131.7,49z"/>
<rect x="55.7" y="45.4" class="st3" width="89.5" height="0.7"/>
<path class="st1" d="M23.6,5.7c0.9,2.2,2,4.2,3.3,6.2c1.7,2.1,2.3,5.5,0.9,7.5s-5.3,2.4-6.8,0.8s-2.8-4-1.4-6.8S23.2,8.5,23.6,5.7z"
/>
<path class="st4" d="M25.2,14.4c-1.1,0.6-1.1,2.3-0.3,2.7c1,0.4,2.1-0.1,2.5-1.1c0,0,0-0.1,0-0.1C27.5,14.4,26.5,13.8,25.2,14.4z"/>
<path class="st5" d="M16.5,38.4c4.9-1.8,10.4-5.6,10.2-5.7c-0.2-0.1-4.1-5.3-12.9-6.6c-3.1-0.4-6.3-0.2-9.3,0.8v11.8
C8.7,39.3,13.7,39.4,16.5,38.4z"/>
<path class="st6" d="M20.5,25.6c6.8,3.1,7.8,5.6,7.8,5.6s-0.9-5.7-9-8.8c-7.1-2.7-11.5-2-14.8-1v2.9C9.8,22.9,15.5,23.4,20.5,25.6z"
/>
<path class="st6" d="M17.4,38.8c5.5-2,10.4-5.9,10.2-6.1c-0.2-0.2-4-6-13.9-7.4c-3.1-0.5-6.2-0.2-9.2,0.7v0.9c3-1,6.2-1.2,9.3-0.8
c8.8,1.3,12.8,6.4,13,6.6s-5.3,3.9-10.2,5.7c-2.8,1-7.8,0.9-12,0.3v0.8C8.9,40.2,14.1,40,17.4,38.8z"/>
<path class="st1" d="M5.7,34.3c0.1,0.3-0.9,1-0.9,1s1-0.4,1.2-0.2s-1.4,1.3-1.4,1.3s1.4-0.7,1.6-0.4c0.2,0.3-1,1.9-1,1.9
s1.2-1.4,1.6-1.3S6.9,38,6.9,38s0.5-1.3,0.9-1.1s0,1.6,0,1.6s0.7-1.3,1-1.3c0.6,0.1,0.6,1.6,0.6,1.6s0.2-1.6,0.5-1.7
s0.5,1.1,0.5,1.1s0-1.1,0.4-1.2s1,1.6,1,1.6s-0.6-1.7-0.3-1.9s1.5,1.9,1.5,1.9s-0.7-1.8-0.4-2.3s2.1,1.2,2.1,1.2s-1.3-1.4-1.1-1.9
s0.9-0.2,1.2,0c-0.3-0.1-1.1-0.6-0.9-0.9s1.6,0,1.6,0s-1.3-0.7-1.2-1s2.1-0.3,2.1-0.3s-1.6-0.4-1.6-0.7c0-0.7,1.6-0.8,1.6-0.8
s-1.4-0.1-1.6-0.6c-0.1-0.3,1.1-0.9,1.1-0.9s-1.5,0.4-1.7,0s1.1-2.3,1.1-2.3s-1.1,1.1-1.7,0.9s0.2-2.2,0.2-2.2s-0.9,1.9-1.4,1.6
s-0.2-1-0.1-1.6c0,0-0.8,1.6-1.4,1.3c-0.6-0.3-0.6-1.8-0.6-1.8s-0.3,1.7-0.8,1.8c-0.4,0.1-0.7-1.1-0.7-1.1s0.1,1.4-0.3,1.5
C7.9,28.4,7,26.9,7,26.9s0.6,1.5,0.3,1.8s-1.1-0.4-1.1-0.4s0.5,0.8,0.2,1c-0.3,0.2-1.8-0.6-1.8-0.6s1.3,1.3,1.1,1.6s-0.7,0-1.2-0.2
v0.2C4.8,30.6,5.1,30.9,5,31s-0.2,0.2-0.5,0.2v0.4C4.8,31.7,5,31.8,5,31.9c0,0.1-0.2,0.2-0.4,0.3v0.7c0.4,0.1,0.8,0.2,0.8,0.4
c0,0.2-0.3,0.5-0.8,0.8v0.3C5.1,34.2,5.6,34.2,5.7,34.3z"/>
<path class="st1" d="M14.6,35.5h0.1H14.6z"/>
<path class="st3" d="M11.3,28.8c-2.2-0.8-4.6,0.4-5.4,2.6c0,0,0,0.1,0,0.1c-0.5,2,0.5,4.2,3.5,4.6c2,0.1,3.8-1.3,4.2-3.3
C14,31.1,13,29.4,11.3,28.8z"/>
<path class="st4" d="M13.4,26.7c-1.1,0.3-1.8,1.4-1.5,2.5c0,0,0,0,0,0c0.3,0.9,1.3,1.4,2.2,1.1c0.2-0.1,0.3-0.1,0.5-0.2
c0.8-0.5,1.2-1.5,0.8-2.5C15.2,26.9,14.3,26.5,13.4,26.7z"/>
<path class="st4" d="M16.7,28.9c-0.6,0.2-1,0.8-0.8,1.4c0,0,0,0,0,0c0.2,0.5,0.7,0.8,1.3,0.6c0.1,0,0.2-0.1,0.2-0.1
c0.5-0.3,0.7-0.9,0.5-1.4C17.7,29,17.2,28.7,16.7,28.9z"/>
<path class="st0" d="M36.4,43.4c-0.2,0.1-0.4,0.3-0.3,0.5c0,0.2,0.2,0.3,0.3,0.3c2.2,0.5,1.8,6.8,1.9,8.5c0.1,2.3,0.1,4.7,0.1,7h1.3
C39.9,53.7,39.9,42.6,36.4,43.4z"/>
<path class="st2" d="M44.5,7.3c0.2-1.9,0.7-3.8,1.4-5.6h-3.2c-0.6,1.9-0.8,4-0.5,6l-0.4,0.2c-0.4,0.2-0.8,0.5-1.1,0.8
c-0.5-1.6-1.2-3.2-2-4.7c-0.5-0.8-1-1.5-1.5-2.3h-3.6c1.5,1.7,2.9,3.5,4,5.4c0.6,1.1,1.1,2.2,1.7,3.2c-1.9,3.4-1.5,8.3-1.5,8.3
c1,8.9,6.1,9.8,6.1,9.8c0.4,4-5,10.8-5,10.8c0.8,2.7,3.9,6.2,8.7,7.8c0,2,0.2,7,0.2,12.5h4.4V13.1C50.8,10,47.7,7.4,44.5,7.3z"/>
<path class="st2" d="M48.3,7.3c0.5-2,1.4-3.9,2.5-5.5h-2.5c-0.9,1.7-1.3,3.6-1,5.5c0.1,0.3,0.3,0.4,0.6,0.3
C48.1,7.6,48.2,7.5,48.3,7.3z"/>
<path class="st2" d="M10,4.4C8.1,4,6.4,3,4.5,2.6V5c1.6,0.6,3.3,1.6,4.8,2.1c2.2,0.7,4.5,0.3,6.4-0.9c1.6-1,2.4-2.8,3-4.5h-3.2
C14.5,3.7,13.1,5.1,10,4.4z"/>
<path class="st1" d="M51.1,45.5c-0.9-0.9-1.8-1.8-2.6-2.8c-0.9-1.2-1.5-2.6-1.7-4.1C46.5,37,46,35.5,45.4,34
c-0.5-1.4-1.2-2.8-2.3-3.9c-0.1-0.1-0.3-0.1-0.4,0c-0.1,0.1-0.1,0.2-0.1,0.3c0.4,1.7,1.6,3.2,2.2,4.8c0.6,1.6,1,3.2,1.3,4.9
C46.8,43,49,44,51.1,45.5L51.1,45.5L51.1,45.5z"/>
<path class="st1" d="M49.3,37.6c-0.1-1.5-0.7-2.9-1.7-4c-0.5-0.4-1.1-0.7-1.7-1c-0.7-0.3-1.4-0.8-2.2-1.1c-0.1-0.1-0.3,0-0.4,0.1
c0,0.1,0,0.2,0,0.3c0.5,0.9,1.7,1.1,2.5,1.5C47.6,34.3,48.8,35.8,49.3,37.6L49.3,37.6L49.3,37.6z"/>
<path class="st1" d="M45.7,35.7c0,1.8,1.5,3,2.5,4.3c0.4,0.8,0.8,1.5,1.3,2.3c0.5,0.6,1.8,0.4,2.5,0.5c0.1,0,0.2-0.1,0.1-0.2
c-0.8-0.5-1.8-0.1-2.5-1c-0.5-0.5-0.3-1.5-0.7-2.1c-0.9-1.4-2.4-2.3-3-3.9L45.7,35.7z"/>
<path class="st1" d="M46.6,40.8c-0.1,1.9-0.4,3.5,1.3,4.8c0.7,0.6,1.6,0.9,2.3,1.6c0.4,0.4,0.9,0.7,1.5,0.8c0.1,0,0.1-0.2,0-0.2
c-1-0.4-1.7-1.4-2.7-2c-0.7-0.3-1.3-0.8-1.7-1.4c-0.7-1-0.2-2.4-0.3-3.5C47,40.6,46.6,40.6,46.6,40.8L46.6,40.8z"/>
<path class="st1" d="M44.3,42.3c0.2-1.3-0.2-2.5,0-3.9s0.6-2.5,0.7-3.7c0-0.2-0.3-0.2-0.4,0c-0.4,1.3-0.7,2.7-0.8,4.1
C43.8,40,44,41.2,44.3,42.3L44.3,42.3z"/>
<path class="st6" d="M12.1,14.7c0.8,1.4,1.6,3.2,3.2,3.9c1.5,0.6,3.2,0.6,4.7-0.1c2.9-1.4,3.5-5.2,6.1-6.7c3.4-1.9,6.4,0.6,8,4.2
c0.1,0.3,0.2,0.5,0.2,0.8c0.9,2.8,0.1,8.5,0.1,8.5c-2.6,3.7-0.6,9,1.8,12.4c4,5.7,6.7,5.7,6.5-0.5s1.8-5.3,2.9-8.6
c1.4-4-0.8-6.6-4.3-5.8s-2.4-3.6-3.8-6.3c-0.6-1.3-1.4-2.6-2.3-3.8c-2.7-4.2-8.6-6.5-12.3-1.5c-1.8,2.4-4.1,9.2-8.1,5.1
c-1.4-1.5-1.8-3.6-3.5-4.9c-1.7-1.1-3.8-1.3-5.7-0.4c-0.5,0.2-0.9,0.5-1.3,0.8V15C7.1,12.5,9.8,10.7,12.1,14.7z"/>
<path class="st2" d="M32.8,22.1c0.5,1.3,1.2,2.5,2,3.7c1,1.3,1.4,3.3,0.5,4.5s-3.2,1.4-4,0.5c-1.1-1-1.5-2.6-0.8-4
C31.2,25,32.6,23.7,32.8,22.1z"/>
<path class="st4" d="M34.1,26.9c-0.5,0-0.9,0.7-0.6,1c0.3,0.3,0.8,0.4,1.1,0.1c0,0,0,0,0.1-0.1c0.2-0.3,0.2-0.6-0.1-0.9
C34.5,26.9,34.3,26.9,34.1,26.9z"/>
<path class="st0" d="M50.1,58.9c-0.1-0.3-0.3-0.6-0.6-0.8c-0.2-0.1-0.5-0.1-0.6,0.1c-0.1,0.1-0.1,0.3,0,0.5c0.2,0.3,0.5,0.5,0.8,0.6
C49.8,59.2,50.2,59.1,50.1,58.9z"/>
<path class="st0" d="M50.4,57.7c0.4-0.2,0.5-0.7,0.5-1.1c0.1-0.3-0.1-0.5-0.4-0.6c0,0,0,0,0,0c-0.3-0.1-0.5,0.1-0.6,0.4
c-0.1,0.3-0.1,0.6,0,0.9C50,57.4,50.1,57.8,50.4,57.7L50.4,57.7z"/>
<path class="st0" d="M51.9,56.8c0.3-0.4,0-1.1-0.1-1.5c-0.2-0.6-1.1-0.3-0.9,0.3c0.1,0.4,0.2,0.7,0.4,1
C51.5,56.8,51.8,57.1,51.9,56.8L51.9,56.8z"/>
<path class="st0" d="M49.1,55.6c0.6,0,0.8-0.6,1-1.1c0.1-0.2,0.1-0.5-0.1-0.6c-0.2-0.2-0.5-0.2-0.7,0c-0.3,0.4-0.4,0.9-0.4,1.5
C48.8,55.5,48.9,55.6,49.1,55.6C49.1,55.6,49.1,55.6,49.1,55.6L49.1,55.6z"/>
<path class="st0" d="M51.9,53.9c0.3-0.4-0.4-1.1-0.6-1.5c-0.1-0.2-0.4-0.3-0.7-0.1c-0.2,0.1-0.3,0.4-0.1,0.7l0,0
C50.7,53.2,51.6,54.3,51.9,53.9L51.9,53.9z"/>
<path class="st0" d="M49.5,53.6L49.5,53.6c0.1,0,0.3-0.1,0.3-0.2c0.2-0.3,0.3-0.7,0.3-1.1c0-0.5-0.6-0.6-0.9-0.3
c-0.2,0.2-0.2,0.5-0.2,0.8C49,53.1,49,53.6,49.5,53.6L49.5,53.6z"/>
<path class="st0" d="M51.5,51.2c0.2-0.2,0.3-0.4,0.4-0.7c0.1-0.2,0.2-0.4,0.3-0.7c0-0.3-0.2-0.4-0.5-0.4c0,0-0.1,0-0.1,0
c-0.3,0.1-0.4,0.4-0.5,0.7c-0.2,0.3-0.2,0.7-0.1,1c0.1,0.2,0.3,0.3,0.4,0.2C51.4,51.3,51.5,51.3,51.5,51.2z"/>
<path class="st0" d="M50.3,51c0.3-0.3,0-1-0.2-1.3c-0.3-0.5-1.2-0.1-0.9,0.4c0.2,0.3,0.4,0.7,0.7,0.9C50,51.1,50.2,51.1,50.3,51
L50.3,51z"/>
<path class="st0" d="M48.6,53c0.1-0.2,0.2-0.4,0.2-0.6c0.1-0.3,0.1-0.5,0.1-0.8c0-0.2-0.2-0.4-0.5-0.4c-0.2,0-0.4,0.2-0.4,0.4
c0,0.3,0,0.5,0,0.8c0,0.3,0.1,0.5,0.3,0.7C48.4,53.1,48.5,53.1,48.6,53L48.6,53z"/>
<path class="st0" d="M51.4,58.4c0-0.6-1-0.5-0.9,0c0,0.5,0.1,0.9,0.3,1.4h0.5C51.5,59.5,51.4,58.7,51.4,58.4z"/>
<path class="st0" d="M49.2,59.8h0.9c0,0,0,0-0.1-0.1C49.8,59.5,49.5,59.6,49.2,59.8z"/>
<path class="st6" d="M42.9,13.6c-1.4,4.1,1.1,10,1.4,10.1c6.6,1.2,4.2-4.5,3.8-6.8c-0.6-3.3,1.8-7.5,4.3-10.3V1.8h-0.6
c-0.3,0.3-0.7,0.5-1,0.9C47.8,5.3,44.6,8.3,42.9,13.6z"/>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 20 KiB

BIN
logo_eh1h.png Executable file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 11 KiB

BIN
logo_interreg.png Executable file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 11 KiB

265
logo_rug.svg Normal file
View File

@ -0,0 +1,265 @@
<?xml version="1.0" encoding="utf-8"?>
<!-- Generator: Adobe Illustrator 25.2.3, SVG Export Plug-In . SVG Version: 6.00 Build 0) -->
<svg version="1.1" id="Layer_1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
viewBox="0 0 425.4 120" style="enable-background:new 0 0 425.4 120;" xml:space="preserve">
<style type="text/css">
.st0{fill:#E3032E;}
</style>
<g>
<path class="st0" d="M347.4,73.8h1.3c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.1v-1.8h-0.4c-1.8,0-2-0.6-2-2.3
v-5.9c0-3.4,1.8-5.2,4.4-5.2c1.9,0,3.2,1.1,3.2,3.7v7.4c0,1.7-0.2,2.3-2,2.3h-0.6v1.8h9.9v-1.8h-0.9c-1.8,0-2-0.6-2-2.3v-8.5
c0-3.9-2.7-5.5-6.3-5.5c-2.9,0-5,1.2-6.2,4.1h-0.1v-4c-1.8,0.2-5,0.4-6.8,0.4V73.8z M344.6,80.9v-0.8c0-6-2.4-8.7-8.2-8.7
c-6,0-8.6,4-8.6,9.3s2.6,9.3,8.6,9.3s7.8-3.1,7.8-6.2h-3.7c0,2.7-1.1,4.1-3.7,4.1c-4.4,0-4.5-4.5-4.5-6.9h12.3V80.9z M332.4,78.8
c0-3,0.9-5.5,4-5.5s3.8,2.6,3.8,5.5H332.4z M318.6,77.6c0,3.1-0.9,4.6-2.8,4.6s-3.1-1.4-3.1-4.6c0-3.1,1.1-4.3,3.1-4.3
C317.5,73.3,318.6,74.3,318.6,77.6 M320.2,92.4c0,1.7-1.1,3.4-4.5,3.4c-3,0-4.2-1.4-4.2-3.2c0-1.9,1.1-3.5,4.3-3.5
C318.9,89.1,320.2,90.5,320.2,92.4 M325.4,71.7l-5.3,0.5c-1-0.3-2.7-0.8-4.2-0.8c-4.7,0-7.8,2.7-7.8,6.2c0,3.3,2.1,4.9,4.7,5.8v0.1
c-2.5,0.2-3.5,1.1-3.5,2.3c0,1.2,0.8,1.8,3.2,2.3V88c-2.5,0.3-5.5,1.6-5.5,4.5s2.5,5.2,8.2,5.2c6,0,9.4-2,9.4-5.3
c0-4.2-3.4-4.7-6.8-5c-4-0.3-4.6-0.6-4.6-1.7c0-1.2,1.6-1.4,2.8-1.5l0.9-0.1c5-0.8,6.6-3.5,6.6-6.4c0-1.5-0.7-2.9-1.6-3.6V74h3.5
L325.4,71.7L325.4,71.7z M282.9,73.8h1.3c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.1v-1.8h-0.5
c-1.8,0-2-0.6-2-2.3v-5.9c0-3.4,1.8-5.2,4.4-5.2c1.9,0,3.2,1.1,3.2,3.7v7.4c0,1.7-0.2,2.3-2,2.3h-0.5v1.8h9.9v-1.8h-0.9
c-1.8,0-2-0.6-2-2.3v-8.5c0-3.9-2.7-5.5-6.3-5.5c-2.9,0-5,1.2-6.2,4.1h-0.1v-4c-1.8,0.2-5,0.4-6.8,0.4V73.8z M273.1,65.8
c0,1.5,0.9,2.7,2.6,2.7s2.6-1.2,2.6-2.7s-0.9-2.7-2.6-2.7C274.1,63.1,273.1,64.2,273.1,65.8 M270.7,73.8h1.3c1.4,0,1.6,0.3,1.6,2.7
v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.5v-1.8H280c-1.8,0-2-0.6-2-2.3V71.5c-2.3,0.2-5.5,0.4-7.3,0.4V73.8z M246.5,73.8h1.3
c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.1v-1.8h-0.5c-1.8,0-2-0.6-2-2.3v-5.9c0-3.4,1.8-5.2,4.4-5.2
c1.9,0,3.2,1.1,3.2,3.7v7.4c0,1.7-0.2,2.3-2,2.3h-0.5v1.8h9.9v-1.8h-1c-1.8,0-2-0.6-2-2.3v-8.5c0-3.9-2.7-5.5-6.3-5.5
c-2.9,0-5,1.2-6.2,4.1h-0.1v-4c-1.8,0.2-5,0.4-6.8,0.4v2H246.5z M226.8,80.6c0,5.3,2.6,9.3,8.6,9.3s8.6-4,8.6-9.3s-2.6-9.3-8.6-9.3
C229.4,71.4,226.8,75.3,226.8,80.6 M231.4,80.6c0-4.9,1.1-7.2,4-7.2s4,2.3,4,7.2c0,4.9-1.1,7.2-4,7.2
C232.5,87.8,231.4,85.5,231.4,80.6 M209,73.8h1.5c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h11.5v-1.8h-1.9
c-1.8,0-2-0.6-2-2.3v-5.9c0-3,1.7-5.2,3.3-5.2c1.4,0,1.8,1,1.8,2.8h3.5v-5.2c-0.8-0.3-1.8-0.4-2.9-0.4c-2.9,0-5,1.2-6.2,4.1h-0.1
v-4c-1.8,0.2-5,0.4-7,0.4L209,73.8L209,73.8z M200.6,77.6c0,3.1-0.9,4.6-2.8,4.6c-1.9,0-3.1-1.4-3.1-4.6c0-3.1,1.1-4.3,3.1-4.3
C199.5,73.3,200.6,74.3,200.6,77.6 M202.1,92.4c0,1.7-1.1,3.4-4.5,3.4c-3,0-4.2-1.4-4.2-3.2c0-1.9,1.1-3.5,4.3-3.5
C200.8,89.1,202.1,90.5,202.1,92.4 M207.4,71.7l-5.3,0.5c-1-0.3-2.7-0.8-4.2-0.8c-4.7,0-7.8,2.7-7.8,6.2c0,3.3,2,4.9,4.8,5.8v0.1
c-2.5,0.2-3.5,1.1-3.5,2.3c0,1.2,0.8,1.8,3.2,2.3V88c-2.5,0.3-5.5,1.6-5.5,4.5s2.5,5.2,8.2,5.2c6,0,9.4-2,9.4-5.3
c0-4.2-3.4-4.7-6.8-5c-4-0.3-4.6-0.6-4.6-1.7c0-1.2,1.6-1.4,2.8-1.5l0.9-0.1c5-0.8,6.6-3.5,6.6-6.4c0-1.5-0.7-2.9-1.6-3.6V74h3.5
L207.4,71.7L207.4,71.7z"/>
<path class="st0" d="M397.1,38h3.2v11.3c0,1.7-0.2,2.3-2,2.3h-1.1v1.8h11.5v-1.8h-1.9c-1.8,0-2-0.6-2-2.3V38h4.7v-2h-4.7v-3.6
c0-2.2,0.9-3.2,2.3-3.2c1.3,0,1.8,0.8,1.8,3.2h3v-4.7c-1.4-0.3-3-0.5-4.8-0.5c-6.5,0-6.8,4-6.8,8.9h-3.2V38z M377.7,44.7
c0,5.3,2.6,9.3,8.6,9.3s8.6-4,8.6-9.3s-2.6-9.3-8.6-9.3C380.2,35.4,377.7,39.3,377.7,44.7 M382.3,44.7c0-4.9,1.1-7.2,4-7.2
s4,2.3,4,7.2s-1.1,7.2-4,7.2C383.3,51.9,382.3,49.6,382.3,44.7 M360,52.9l-1.7,4.4c-0.5,1.3-0.9,2-2.3,2h-1.6v1.8h9.6v-1.8h-1.2
c-1.4,0-1.8-0.3-1.8-1.1c0-0.6,0.4-1.4,0.6-1.9l7.1-16.9c0.5-1.2,0.8-1.8,1.6-1.8h0.8V36h-7.6v1.8h1.5c0.6,0,0.9,0.1,0.9,0.6
c0,0.3-0.2,0.8-0.4,1.3l-3.3,8.4l-3-8c-0.2-0.6-0.5-1.1-0.5-1.6s0.4-0.6,1-0.6h1.3V36h-8.9v1.8h0.5c0.9,0,1.3,0.5,2,2.3L360,52.9z
M335.9,38h3.2v10.3c0,4.5,2,5.6,5.6,5.6c3.5,0,5.5-1.7,5.5-5.6v-0.8h-3v1.8c0,1.5-0.6,2.2-1.9,2.2s-1.9-0.7-1.9-2.2V38h5.8v-2
h-5.8v-5.1h-3.1c-0.3,3.6-1.1,4.7-4.4,5.1L335.9,38L335.9,38z M326.4,29.8c0,1.5,0.9,2.7,2.6,2.7s2.6-1.2,2.6-2.7s-0.9-2.7-2.6-2.7
C327.3,27.1,326.4,28.3,326.4,29.8 M323.9,37.8h1.3c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.5v-1.8h-0.9
c-1.8,0-2-0.6-2-2.3V35.5c-2.3,0.2-5.5,0.4-7.3,0.4V37.8z M306.7,52.8c1,0.4,3.7,1.1,6.6,1.1c3.8,0,7.8-1.6,7.8-5.8
c0-2.7-1.4-3.8-4.5-4.8l-2.9-1c-1.7-0.5-2.6-1.5-2.6-2.9s1-2.1,2.7-2.1c2.6,0,3.3,1.2,3.3,3.9h3v-4.9c-1-0.5-3.5-1-6.2-1
c-4.2,0-7.2,2-7.2,5.3c0,2.8,2,4.3,6.2,5.6c3.3,1,3.8,1.8,3.8,3.1c0,1.7-1.5,2.6-3.8,2.6c-2.5,0-3.2-1.7-3.2-4.2h-3L306.7,52.8
L306.7,52.8z M288,37.8h1.5c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h11.5v-1.8h-1.9c-1.8,0-2-0.6-2-2.3v-5.9
c0-3,1.7-5.3,3.3-5.3c1.4,0,1.8,1,1.8,2.8h3.5v-5.2c-0.8-0.3-1.8-0.4-2.9-0.4c-2.9,0-5,1.2-6.2,4.1h-0.1v-4c-1.8,0.2-5,0.4-7,0.4v2
H288z M285.4,45v-0.8c0-6-2.4-8.7-8.2-8.7c-6,0-8.6,4-8.6,9.3s2.6,9.3,8.6,9.3s7.8-3.1,7.8-6.2h-3.7c0,2.7-1.1,4.1-3.7,4.1
c-4.4,0-4.5-4.5-4.5-6.9L285.4,45L285.4,45z M273.2,42.9c0-3,0.9-5.5,4-5.5s3.8,2.6,3.8,5.5H273.2z M259.9,37.7h1.5
c0.8,0,1,0.2,1,0.5s-0.1,0.6-0.2,0.9l-3.7,10.7h-0.1l-3.5-10.1c-0.1-0.4-0.3-0.8-0.3-1.3c0-0.4,0.4-0.6,1.4-0.6h1.2V36h-9v1.8h0.4
c0.8,0,1,0.2,1.5,1.4l5.6,14.5h4.2l5.6-14.6c0.4-0.9,0.7-1.2,1.4-1.2h0.5V36h-7.6v1.7H259.9z M239.8,29.8c0,1.5,0.9,2.7,2.6,2.7
c1.7,0,2.6-1.2,2.6-2.7s-0.9-2.7-2.6-2.7C240.8,27.1,239.8,28.3,239.8,29.8 M237.4,37.8h1.3c1.4,0,1.6,0.3,1.6,2.7v8.8
c0,1.7-0.2,2.3-2,2.3h-1.2v1.8h10.5v-1.8h-0.8c-1.8,0-2-0.6-2-2.3V35.5c-2.3,0.2-5.5,0.4-7.3,0.4L237.4,37.8L237.4,37.8z
M213.2,37.8h1.3c1.4,0,1.6,0.3,1.6,2.7v8.8c0,1.7-0.2,2.3-2,2.3h-1.2v1.8H223v-1.8h-0.5c-1.8,0-2-0.6-2-2.3v-5.9
c0-3.4,1.8-5.3,4.4-5.3c1.9,0,3.2,1.2,3.2,3.7v7.4c0,1.7-0.2,2.3-2,2.3h-0.5v1.8h9.9v-1.8h-0.9c-1.8,0-2-0.6-2-2.3v-8.5
c0-3.9-2.7-5.5-6.3-5.5c-2.9,0-5,1.2-6.2,4.1H220v-4c-1.8,0.2-5,0.4-6.8,0.4V37.8z M204.5,53.4h6.8v-1.8h-0.9c-1.8,0-2-0.6-2-2.3
V35.5c-2.3,0.2-5.5,0.4-7.3,0.4v1.9h1.3c1.4,0,1.6,0.3,1.6,2.7v4.9c0,3.7-1.3,5.6-4.4,5.6c-2,0-3.2-1-3.2-3.2V35.5
c-2.3,0.2-5.5,0.4-7.3,0.4v1.9h1.3c1.4,0,1.6,0.3,1.6,2.7V49c0,3.3,2.2,5,5.7,5c3.6,0,5.9-1.6,6.7-4h0.1L204.5,53.4L204.5,53.4z"/>
</g>
<polygon class="st0" points="164.5,35.7 100.6,114.5 105.7,114.6 169.6,35.7 "/>
<g>
<path class="st0" d="M46.3,20.3c-0.5,0.1-1.1,0.3-1.5-0.6c-0.3-0.8,1-2,1.4-2.4c0.6-0.5-0.2-1.1-0.6-0.5c-0.1,0.2-1.1,1.6-1.9,1.6
c-1.2,0-1.2-1.5-1.2-1.5s-1.4-0.9-1.4-3.7c0-2.5,1.6-3.7,1.6-3.7s0-1.4,1.1-1.4c1.1,0,1.8,1.6,1.9,1.7c0.6,0.8,1.3,0.1,0.8-0.5
c-1.2-1.4-1.4-2.5-0.1-3.1c0.5-1.1,1.9-1.8,3.4-1.9h0.1l0,0c1.5,0.1,2.9,0.9,3.4,1.9c1.3,0.6,1,1.7-0.1,3.1
c-0.5,0.6,0.2,1.3,0.8,0.5c0.1-0.1,0.8-1.6,1.9-1.7C57,8.1,57,9.5,57,9.5s1.6,1.2,1.6,3.7c0,2.8-1.4,3.7-1.4,3.7s0.1,1.5-1.2,1.5
c-0.8,0-1.8-1.4-1.9-1.6c-0.4-0.6-1.1,0-0.6,0.5c0.4,0.4,1.7,1.6,1.4,2.4c-0.4,0.8-1,0.6-1.5,0.6c0,0-0.4,0.7-1.1,0.7
c3.2,2.4,8.3,1,8.9-0.7c0,0-0.9,0.2-0.8-0.7c0-0.5,0.6-0.8,1.3-0.9c-0.2-0.3-0.2-0.8-0.2-1.2c0.1-1.3,0.9-2.3,1.9-2.4
c1,0,1.8,0.9,1.7,2.2c0,0.6-0.3,1.2-0.6,1.6c0.7,0.3,1.2,0.6,1.2,1.1c-0.2,1.2-1.2,0.9-1.2,0.9c-0.1,2.6,3.9,3.2,4.9,2.5
c-0.4-1.5,0.2-2,0.7-2.4c0.3-0.3,1.3-0.9,1.5-1c0.3-0.2,0.5-0.6,0.3-0.8c-0.2-0.1-0.6,0.1-0.8,0.3c-0.3,0.3-0.8,1-1.5,0.8
c-0.9-0.2-0.5-1.3-0.7-1.8c-1-3.5-0.1-6,3.4-7.5c0,0,1.3-1.4,2.5-0.8c1.2,0.6,0.4,2.5,0.4,2.5l0.4,0.2c1.3-2.3,3.2-4,5.8-4.1
c1.9,0,2.8,1.1,2.9,2.6c0.2,3.4-3.3,2.1-3,0.9c0,0-0.8,0.1-1.3,0.8c0-0.2,0-2.2-1.8-1.2c-0.5,0.3-1.4,1.8-1.5,2
c-0.2,0.7,0.1,0.8-0.3,1.4c-0.3,0.5-0.7,0.6-0.8,1c-0.2,0.4,0.1,1.1-0.2,1.5c-0.3,0.6-0.7,0.6-0.9,1.1c-0.2,0.4-2.7,6.8-2.7,6.8
s1,0.6,0.8,1.6c-0.3,1.3-1.1,1-1.5,1.8c-13.7-3.5-27.8-3.5-42.5-0.1c-0.4-0.8-1.2-0.5-1.5-1.8c-0.2-1,0.8-1.6,0.8-1.6
s-2.5-6.4-2.7-6.8c-0.2-0.5-0.6-0.5-0.9-1.1c-0.2-0.5,0-1.2-0.2-1.5c-0.2-0.4-0.5-0.5-0.8-1c-0.4-0.7,0-0.8-0.3-1.4
c-0.1-0.2-1-1.7-1.5-2c-1.8-1.1-1.8,1-1.8,1.2c-0.5-0.7-1.3-0.8-1.3-0.8c0.3,1.3-3.2,2.5-3-0.9c0.1-1.5,1-2.6,2.9-2.6
c2.7,0.2,4.5,1.9,5.8,4.3l0.4-0.2c0,0-0.7-1.9,0.4-2.5c1.2-0.6,2.5,0.8,2.5,0.8c3.5,1.5,4.4,3.9,3.4,7.5c-0.2,0.6,0.2,1.6-0.7,1.8
c-0.8,0.2-1.2-0.5-1.5-0.8c-0.2-0.2-0.6-0.5-0.8-0.3c-0.2,0.2,0,0.6,0.3,0.8c0.1,0.1,1.1,0.7,1.5,1c0.5,0.4,1.1,0.9,0.7,2.4
c1,0.7,5.1,0.2,4.9-2.5c0,0-1.1,0.3-1.3-0.9c-0.1-0.4,0.4-0.8,1.2-1.1c-0.4-0.4-0.6-1-0.6-1.6c-0.1-1.3,0.7-2.2,1.7-2.2
s1.9,1.1,1.9,2.4c0,0.4-0.1,0.9-0.2,1.2c0.7,0.1,1.3,0.4,1.3,0.9c0,0.9-0.8,0.7-0.8,0.7c0.7,1.8,5.7,3.1,8.9,0.7
C46.7,21.1,46.3,20.3,46.3,20.3 M47.4,13.8c0,1.3,1.1,2.4,2.4,2.4c1.3,0,2.4-1.1,2.4-2.4s-1.1-2.4-2.4-2.4
C48.5,11.4,47.4,12.5,47.4,13.8 M60.5,24c1,0,3,0.4,3,0.4s-0.8-0.9-1.2-1.6c0,0-0.5,0.4-0.7,0.6C61.3,23.6,60.5,24,60.5,24
M49.8,21.9c-0.4,0.4-1.2,1.2-2,1.5c0,0,1.4,0,2,0l0,0c0.6,0,2,0,2,0C51,23.1,50.2,22.4,49.8,21.9 M39.1,24c0,0-0.8-0.4-1-0.6
c-0.3-0.2-0.7-0.6-0.7-0.6c-0.4,0.6-1.2,1.6-1.2,1.6S38.1,24,39.1,24 M70.4,30.4c0.7,0.2,1.6,0.8,1.3,1.8c-0.3,0.9-1.4,1-2,0.9
c-0.7-0.2-1.6-0.8-1.3-1.8C68.6,30.3,69.8,30.2,70.4,30.4 M61.8,30.1l-2,1.7l-1.7-2l2-1.7L61.8,30.1z M30.1,33
c-0.7,0.2-1.8,0.1-2-0.9c-0.3-0.9,0.7-1.6,1.3-1.8c0.7-0.2,1.8-0.1,2,0.9C31.7,32.2,30.8,32.9,30.1,33 M47.8,29.5
c0-0.8,0.9-1.4,2.1-1.4c1.1,0,2.1,0.6,2.1,1.4s-0.9,1.4-2.1,1.4C48.8,30.9,47.8,30.3,47.8,29.5 M38,30.1l1.7-2l2,1.7l-1.7,2
L38,30.1z M20.9,90.3c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.7-1.2s1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C21.7,91.6,20.7,91.4,20.9,90.3
M25,85.9c0.2-0.9,1.2-0.7,1.2-0.7S26,84.4,26.8,84c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.8-0.1C25.8,87.2,24.7,86.9,25,85.9
M29.1,81.5c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.2C29.8,82.7,28.8,82.5,29.1,81.5
M49.8,40.3c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2C52.5,38,53,39,53,39l0.4,2.7l-2.9-0.1C50.6,41.6,49.6,41.3,49.8,40.3
M53.8,55.5c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C54.5,56.8,53.5,56.5,53.8,55.5
M58.5,50.4c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C59.3,51.7,58.3,51.4,58.5,50.4
M63.3,45.4c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7L64,46.7C64.1,46.7,63,46.4,63.3,45.4
M68.1,40.4c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.2C68.8,41.6,67.8,41.4,68.1,40.4
M18.3,74.3c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.5,1.4,0.6,1.4,0.6l0.4,2.7L19,75.6C19,75.5,18,75.3,18.3,74.3
M29.3,101.2c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C30.1,102.5,29,102.2,29.3,101.2
M34,96.1c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.8-0.1C34.8,97.4,33.8,97.1,34,96.1
M38.7,91c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C39.5,92.3,38.5,92,38.7,91
M43.4,85.9c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C44.2,87.2,43.2,86.9,43.4,85.9
M64.1,64.1c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C64.9,65.4,63.9,65.1,64.1,64.1
M68.4,59.5c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C69.1,60.8,68.1,60.5,68.4,59.5
M72.6,54.9c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C73.4,56.2,72.4,55.9,72.6,54.9
M76.9,50.2c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C77.6,51.5,76.6,51.3,76.9,50.2
M43.9,105.8c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C44.7,107,43.7,106.8,43.9,105.8
M76.9,69.3c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2c0.9-0.4,1.4,0.6,1.4,0.6l0.4,2.7l-2.9-0.1C77.6,70.6,76.6,70.3,76.9,69.3
M45,73c0-0.1,0.2-0.1,0.7-0.2c0.4-0.1,0.8-0.2,0.8-0.1c0,0.2-0.3,0-0.3,0.4v3.3c0,0.2,0.2,0,0.2,0.2s-0.4,0.1-0.7,0.1
S45,76.8,45,76.6s0.3,0,0.3-0.2v-3.2C45.3,72.9,45,73.2,45,73 M41.4,74.4c0-0.1,0.1-0.1,0.3-0.2c0.2-0.1,0.3-0.2,0.5-0.1
c0.2,0.2,1.2,1.4,1.2,1.4v-1.7c0-0.2-0.3,0.1-0.3-0.1c0-0.1,0.1-0.1,0.4-0.2c0.2-0.1,0.6-0.4,0.6-0.2c0,0.2-0.2,0.1-0.2,0.4V77
c0,0.3,0,0.3-0.1,0.3c-0.1,0-1.7-2.1-1.7-2.1v2.2c0,0.2,0.4-0.1,0.4,0.1c0,0.1-0.2,0.2-0.5,0.3c-0.2,0.1-0.6,0.3-0.6,0.1
c0-0.2,0.3-0.1,0.3-0.3v-2.9C41.6,74.4,41.4,74.6,41.4,74.4 M40.1,76.4c0-1.4-0.9-0.9-0.9-0.9v2.8C39.2,78.4,40.1,78.4,40.1,76.4
M38,75.9c0-0.1,0.4-0.3,0.7-0.4c0.5-0.2,2.2-1.1,2.2,1c0,1.9-1.3,2.2-1.7,2.4c-0.4,0.2-1,0.5-1,0.4c-0.1-0.1,0.2-0.2,0.2-0.5v-2.3
C38.4,75.8,38,76.1,38,75.9 M43.8,67.4c0-0.1,0.3-0.1,0.5-0.2c0.3-0.1,0.5-0.1,0.6,0c0.1,0.1,0.7,1.1,0.7,1.1s0.8-1.1,0.8-1.2
c0.1-0.1,0.1-0.2,0.4-0.2c0.4,0,0.5,0,0.5,0c0,0.1-0.2,0.1-0.2,0.4c0,0.2,0,2.9,0,3c0,0.3,0.2,0.2,0.2,0.3c0,0.1-0.2,0.1-0.7,0.1
c-0.4,0-0.7,0.1-0.7,0c0-0.2,0.2,0,0.2-0.3v-2l-0.8,1.1l-1-1.4v2.4c0,0.4,0.4,0.2,0.4,0.3c0,0.1-0.3,0.1-0.5,0.2s-0.5,0.2-0.5,0.1
C43.6,70.9,44,71,44,70.6s0-2.6,0-2.8C44.1,67.4,43.8,67.6,43.8,67.4 M42.7,67.9c0.1-0.1,0.5-0.2,0.5-0.2c0.1,0.1-0.1,0.1-0.3,0.7
c-0.1,0.2-0.7,3.6-0.9,3.7c-0.1,0-1.2-2.7-1.3-2.9c-0.2-0.4-0.4-0.1-0.4-0.3c0-0.1,0.3-0.2,0.5-0.3c0.1-0.1,0.6-0.4,0.7-0.3
c0.1,0.1-0.3,0.1-0.1,0.5c0.1,0.3,0.7,1.6,0.7,1.6s0.4-1.5,0.5-2c0.1-0.5-0.3-0.3-0.3-0.4C42.3,68,42.5,67.9,42.7,67.9L42.7,67.9z
M38.5,71.4v1.8c0,0,1-0.2,1-1.4C39.5,70.9,38.5,71.4,38.5,71.4 M38.5,69.8V71c0,0,0.7-0.3,0.7-0.9C39.2,69.4,38.5,69.8,38.5,69.8
M38.6,69.5c0.4-0.2,1.5-0.4,1.5,0.5c0,0.7-0.4,0.8-0.4,0.8s0.8,0.1,0.8,0.8c0,0.7-0.4,1.2-0.8,1.5c-0.2,0.1-1.5,0.7-1.6,0.8
c-0.1,0.1-0.4,0.2-0.4,0.2c-0.1-0.2,0.2-0.1,0.2-0.6v-3c0-0.6-0.3-0.4-0.3-0.5C37.5,69.8,38.2,69.6,38.6,69.5 M45.2,61.1v1.5
c0,0,0.7,0,0.7-0.9C45.9,60.8,45.2,61.1,45.2,61.1 M47.1,64.5c0.2,0,0.3-0.1,0.3-0.1s-0.1,0.5-0.6,0.5c-0.8,0-0.7-1.3-1-1.7
c-0.2-0.4-0.6-0.2-0.6-0.2v1.3c0,0.4,0.3,0.2,0.3,0.4c0,0.1-0.2,0.1-0.2,0.1S44.7,65,44.5,65s-0.3,0.1-0.3,0c0-0.2,0.2-0.1,0.2-0.5
v-2.8c0-0.5-0.3-0.4-0.3-0.5s0.2-0.1,0.4-0.2c0.4-0.1,0.5-0.2,1-0.3s1.4,0.1,1.4,0.8c0,0.8-0.4,0.9-0.7,1.1
C47.1,63.2,46.7,64.4,47.1,64.5 M41.3,62.5c0.4-0.1,1-0.4,1.7-0.8c0.1-0.1,0.4-0.2,0.5,0c0.1,0.3,0.2,0.6,0.2,0.6
c-0.1,0.1-0.2,0-0.4-0.1c-0.1-0.1-0.3-0.2-0.5-0.1c-0.2,0-0.4,0.1-0.4,0.1v1.2c0,0,0.4,0,0.5-0.2c0-0.2,0.1-0.4,0.2-0.5
c0.1,0,0.1,0.2,0.1,0.6c0,0.1,0,0.2,0,0.2c0,0.4,0,0.6-0.1,0.6c-0.1,0-0.2-0.3-0.2-0.4c0-0.1-0.5,0-0.5,0.1v1.7
c0,0,0.3-0.2,0.5-0.3c0.2-0.1,0.5-0.5,0.6-0.7c0.1-0.2,0.2-0.4,0.3-0.4c0.1,0-0.1,0.7-0.1,0.7s0,0.3-0.2,0.4s-1.6,0.7-1.7,0.8
c-0.2,0.1-0.5,0.3-0.5,0.2c0-0.2,0.2-0.1,0.2-0.6v-2.8C41.5,62.8,41.5,62.6,41.3,62.5C41.1,62.7,41,62.6,41.3,62.5 M38.2,63.8
c0.2-0.1,0.7-0.3,0.8-0.2c0.1,0.2-0.3,0.1-0.2,0.5c0.1,0.3,0.7,1.8,0.7,1.8l0.5-2.1c0.1-0.5-0.3-0.3-0.3-0.4c0-0.1,0.3-0.2,0.4-0.2
c0.1-0.1,0.6-0.3,0.6-0.2c0.1,0.2-0.2,0.2-0.3,0.6c-0.1,0.5-1,3.8-1.2,4c-0.1,0.1-1.3-2.8-1.4-3c-0.1-0.2-0.4-0.1-0.4-0.3
C37.5,64,38,63.9,38.2,63.8 M53.2,73.1c0-0.1,0.1-0.1,0.3,0s0.4,0.1,0.6,0.4c0.2,0.3,1.4,2.4,1.4,2.4V74c0-0.3-0.2-0.3-0.2-0.4
s0.2,0,0.4,0.1s0.4,0.1,0.4,0.2s-0.2,0-0.2,0.2v3.6c0,0,0,0.2-0.1,0c-0.1-0.1-2-3.1-2-3.1s0,1.9,0,2.1S54,76.9,54,77
c0,0.1-0.3,0.1-0.4,0c-0.2,0-0.4,0-0.4-0.2c0-0.1,0.2,0.1,0.2-0.3v-3.1C53.5,73.2,53.2,73.2,53.2,73.1 M55,67.5
c0-0.1,0.6,0.1,1.1,0.2s1.4,0.3,1.4,0.6c0,0.4,0.1,0.7,0,0.7s-0.2-0.4-0.4-0.6s-0.7-0.3-0.8-0.3s-0.1,0-0.1,0.1v1.1
c0,0,0.3,0.1,0.5,0.1c0.1-0.1,0.1-0.4,0.2-0.4s0.1,0.2,0,0.6c0,0.4,0,0.7-0.1,0.7s-0.1-0.4-0.3-0.6s-0.4-0.2-0.4-0.2v1.8
c0,0,0.2,0.2,0.7,0.1c0.5-0.2,0.8-0.5,0.9-0.4c0.1,0.1,0,0.2-0.2,0.5c-0.2,0.4-0.3,0.6-0.6,0.5c-0.2-0.1-0.7-0.3-1.1-0.4
c-0.3-0.1-1-0.3-1-0.4s0.3,0.1,0.3-0.3v-3.2C55.3,67.6,55,67.6,55,67.5 M54.2,66.9c0.2,0,0.1,0.6,0.2,0.8c0,0.4,0.2,0.7,0,0.7
s-0.4-0.6-0.7-0.9s-1.3-0.8-1.3,1.3c0,1.8,0.8,1.8,1.2,1.6c0.4-0.1,0.6-0.5,0.6-0.4c0.1,0-0.4,0.9-1.2,1c-0.9,0.1-1.7-0.8-1.7-2.1
c0-1.4,0.7-2.2,1.5-2.2c0.7,0,0.9,0.5,1.2,0.5C54.2,67.3,54,66.9,54.2,66.9 M56.5,62.1c0-0.2,0.3,0,0.8,0.2s0.9,0.3,0.8,0.4
c0,0.1-0.4-0.1-0.3,0.2c0,0.2,0.6,2.1,0.6,2.1s0.6-1.5,0.7-1.6c0-0.2-0.2-0.2-0.2-0.3s0.2,0,0.4,0.1s0.4,0.2,0.4,0.3
s-0.2-0.1-0.3,0c-0.1,0.2-1.4,3.1-1.4,3.1l-1.3-4.2C56.6,62.2,56.5,62.2,56.5,62.1 M53.5,61c0-0.1,0.2,0,0.2,0l1.2,0.4
c0,0,0.2,0.1,0.2,0.2c0,0.1-0.4-0.1-0.4,0.2V65c0,0,0.1,0.2,0.5,0.1c0.4-0.2,1-0.5,1-0.5s0.3-0.1,0.2,0.1s-0.3,0.8-0.3,0.8
s-0.1,0.2-0.4,0.2c-0.3-0.1-1.1-0.3-1.3-0.3c-0.2-0.1-0.8-0.2-0.8-0.2s-0.1,0-0.1-0.1s0.4,0,0.4-0.3v-3.2
C53.8,61.1,53.5,61.1,53.5,61 M58,72.5c0-0.2,0.3,0.1,0.3-0.3v-3.1c0-0.4-0.2-0.4-0.2-0.5c0-0.2,0.3,0.1,0.4,0.1
c0.1,0,1,0.5,1.1,0.5s1.1,0.4,1.1,1.5c0,0.7-0.6,0.6-0.6,0.6s0.6,0.4,0.6,0.9s0.1,1,0.1,1.1s0.1,0.4,0.4,0.1c0,0,0,0.6-0.7,0.4
c-0.5-0.2-0.6-0.6-0.6-0.9s-0.2-1.7-0.8-1.7v1.4c0,0.4,0.2,0.3,0.2,0.5c0,0.1-0.3-0.1-0.6-0.2C58.3,72.7,58,72.6,58,72.5
M59.1,69.3v1.5c0.1,0,0.8,0.5,0.8-0.4C59.9,69.4,59.1,69.3,59.1,69.3 M57.5,74.8c0.1-0.2-0.1-0.3-0.1-0.4s0.3,0.1,0.5,0.2
s0.5,0.2,0.5,0.4c0.1,0.2,1,3.4,1.1,3.7c0.1,0.3,0.3,0.2,0.2,0.4c0,0.1-0.3-0.1-0.8-0.3c-0.5-0.2-0.7-0.2-0.7-0.3
c0-0.1,0.5,0.1,0.3-0.2c-0.1-0.2-0.2-0.8-0.2-0.8L57,77.1l-0.2,0.6C56.7,78,57,78,56.9,78.1c0,0.1-0.2,0-0.4-0.1s-0.3-0.1-0.3-0.2
s0.2,0,0.3-0.2C56.7,77.4,57.5,75,57.5,74.8 M57.7,75.2l-0.4,1.4l1,0.3L57.7,75.2z M82.9,35.8v41.7c0.5,24.9-19.9,33.8-33.4,33.8
s-33.8-8.8-33.4-33.8V35.8h12.4c-0.1-0.8,0.1-1.3,0.2-1.3c17-3.4,25.2-3.6,42.2,0c0.4,0.4,0.4,0.9,0.4,1.3H82.9z M22.3,96.3
l13-13.9v-4.1h-1.5c0,0-1-0.3-0.8-1.3c0.2-0.9,1.2-0.7,1.2-0.7s-0.2-0.8,0.6-1.2C35,75,35.1,75,35.2,75v-2.7L19.1,89.6
C19.9,92.1,21,94.3,22.3,96.3 M38.5,60.8c0.2-0.1,0.4-0.2,0.5-0.3c0.6-0.3,1.8-0.9,3-1.4s2.6-1,3.8-1c1.1,0,2.1,0.3,2.7,0.7
c0.3,0.2,0.6,0.3,0.7,0.5l0.1,0.1c0,0,0-0.1,0.1-0.1c0.1-0.2,0.3-0.3,0.6-0.5c0.6-0.4,1.4-0.6,2.7-0.6c1.4,0,2.9,0.5,4.1,1.1
l0.3,0.1L78,37h-9.5L50,56.7v-9.5L59.6,37H17.3v40.5c0,1.5,0,3,0.1,4.4l9.1-9.7h8.8v-7.7c-0.2,0.2-0.4,0.2-0.4,0.2s0.2-0.7-0.4-0.8
c0,0-0.1,0-0.2,0c-0.3,0-0.5,0.2-0.7,0.3c-0.3,0.3-1.3,1.4-1.5,1.6c-0.2-0.2-1.1-1.3-1.5-1.6c-0.2-0.2-0.4-0.3-0.7-0.3
c-0.1,0-0.1,0-0.2,0c-0.6,0.1-0.4,0.8-0.4,0.8s-0.6,0.1-0.6-0.7c0-0.6,0.5-0.9,0.9-1.1c0.6-0.1,1.3-0.2,1.4-1.2c0-0.2,0-0.3,0-0.3
s-0.2,0.3-0.8,0.6c-0.7,0.3-2.4,0.3-2.4,1.3c0,0.4,0.4,0.4,0.4,0.4s0,0.2-0.3,0.2c-0.1,0-0.1,0-0.2,0c-0.4-0.1-0.5-0.5-0.5-1
c0-0.3-0.2-0.8-0.6-0.7c-0.1,0-0.2,0-0.3,0.1c-0.3,0.2-0.2,0.5-0.2,0.5s-0.4-0.2-0.3-0.7c0.1-0.4,0.3-0.6,0.7-0.7h0.1
c0.5-0.1,0.8,0.1,0.8,0.1s-0.1-0.3-0.1-0.7c0-0.3,0.2-0.6,0.6-0.7c0.7-0.1,0.8,0.3,0.7,0.6c0,0-0.2-0.2-0.3-0.1h-0.1
c-0.1,0.1-0.2,0.1-0.2,0.2c-0.1,0.3,0.1,0.6,0.1,0.7c0.1,0.2,0.5,0.3,1.1,0.2s1-0.5,1.2-0.9c0.1-0.2,0.2-0.3,0.1-0.5l0.3-3.6
c0,0,0.1-0.9-0.5-1c-0.1,0-0.1,0-0.2,0c-0.5,0.1-1.1,0.8-0.9,1.7c0.1,0.7-0.2,1.2-0.5,1.3c-0.4,0.1-0.7,0-0.8-0.3
c0.7,0,0.7-0.6,0.5-0.9c-0.1-0.1-0.2-0.1-0.4-0.1c-0.7,0.1-1.8,1.1-2,1.6c-0.2,0.5,0.2,0.4,0.4,0.8c0.1,0.3-0.2,0.6-0.2,0.6
c0,0.1,0,0.2,0,0.3c-0.1,0.3-0.2,0.4-0.4,0.4c-0.1,0-0.2,0-0.3,0c0.2-0.1,0.2-0.3,0.3-0.4c0-0.1,0-0.2,0-0.2s-0.2,0-0.4-0.3
c-0.2-0.3,0-0.4-0.2-0.8c-0.2-0.4-0.9-0.7-1.4-0.8h-0.1c-0.1,0-0.2,0.1-0.3,0.1h-0.1c-0.4,0-0.3-0.2-0.6-0.2
c-0.2,0-0.3,0.2-0.2,0.4V59c-0.2-0.1-0.3-0.3-0.3-0.5c0-0.5,0.3-0.9,0.6-0.9c0.4,0,0.5,0.2,0.6,0.2c0.2-0.9-0.5-0.6-0.8-1
c-0.2-0.3-0.1-0.4-0.1-0.5c0-0.2-0.2-0.2-0.4-0.1c-0.1,0-0.1,0-0.2,0c0,0,0.1-0.4,0.5-0.5c0.1,0,0.3,0,0.6,0.1
c0.2-0.1,0.4,0,0.5,0.2s0,0.4,0,0.6c0.1,0.6,0.4,0.6,0.5,0.5c-0.3-0.8,0.1-1.1,0.1-1.2c0-0.1,0-0.3-0.2-0.4c0,0-0.1,0,0-0.1
c0,0,0.8,0,0.9,0.5c0,0,0.3,0.2,0.3,0.6c0,0.5-0.3,0.6-0.4,0.7c0.1,0.6,0.4,0.6,0.7,0.6c0.3,0,0.6-0.2,0.6-0.2
c0.5-0.2,1.6-0.9,1.3-1.4c-0.1-0.2-0.3-0.4-0.6-0.3c-0.1,0-0.2,0.1-0.3,0.1c-0.3,0.3-0.2,0.7-0.2,0.7c-0.5,0.1-0.7-0.7-0.4-1
c0.2-0.2,0.5-0.3,0.7-0.4c0.3-0.1,0.6,0,1-0.1s0.7-0.3,0.9-0.8c0.2-0.3,0.2-0.8,0-1.2c-0.2-0.4-0.6-0.9-1.1-1
c-0.1,0.9-0.6,1.6-1.2,2c-0.1,0.1-0.3,0.2-0.5,0.2c-0.1,0-0.2,0-0.1,0c0.8-0.9,0.6-1.9,0.6-2c-0.1,0.1-0.7,1.2-1.7,1.7
c-0.1,0-0.2,0.1-0.3,0.1c-0.6,0.1-1.2-0.2-0.9-0.2c0.4-0.1,1.9-1,1.5-2.9c-0.1,0.1-0.7,1.3-1.6,1.9c-0.4,0.2-0.7,0.4-1.1,0.4
c-0.7,0.1-1.2-0.1-1.1-0.2c0,0,1.8-0.9,1.9-1.7c-0.1,0-0.6,0.4-1.1,0.5c-0.1,0-0.2,0-0.2,0c-1.7,0.2-1.7-0.9-1.7-0.9
c0.1,0,1.6,0.1,2.8-2.4c0,0-0.8,0.3-1.7,0.4c-0.5,0.1-0.8-0.3-0.7-0.3s0.2,0,0.3,0c0.3,0,0.7-0.2,1.2-0.6c-0.1-0.1-2.1-0.9-1.3-2.2
c0,0,0.5,0.5,1.2,0.5c0.5,0,1.3,0,1.5-0.5c0,0-1-0.1-2-0.7c-0.6-0.4-0.8-1.3-0.6-1s0.5,0.3,0.8,0.4c0.3,0.1,0.5,0,0.5,0
s-1.5-1.4-0.5-2.5c0,0,0.5,1.4,1.7,1.4c0,0-0.6-0.6-0.7-1.3c-0.1-0.5-0.1-1.1,0-0.9c0.1,0.1,0.2,0.4,0.3,0.5
c0.2,0.3,0.5,0.6,0.7,0.9c0,0-0.2-0.7,0.1-1.4c0-0.1,0.4-0.7,0.4-0.5c0,0,0,0.4,0,0.6c0.1,0.5,0.3,1.1,1.1,2
c1.1,1.2,2.4,1.1,2.4,1.9c0,0.9-1.1,0.7-1.8,0.7c-0.2,0-0.2,0.4,0,0.6c0.6,0.8,3,1,3.8-0.3c0.3-0.4,0.3-1,0.2-1.5
c-0.2-0.7-0.8-0.7-1.8-0.9c-0.7-0.2-0.5-0.5-0.4-0.5c0,0,0.2,0.1,0.4,0.1c0.5,0,0.2-0.7,0.2-0.7c-0.1,0-0.7,0.2-1.2,0.3
c-0.6,0.1-1.4-0.2-1.4-0.6c0-0.5,0.6-0.7,0.6-0.5c0,0-0.4,0.7,0.8,0.7c0.4,0,1.1-0.1,1.1-0.1c0-0.2-0.4-0.5-0.6-0.5s-0.4,0.1-0.7,0
c-0.1-0.3,0.2-0.6,0.4-0.7c0.2-0.1,0.4-0.1,0.5-0.1s0.2-0.5,1-0.5c0.4,0,1,0.3,1.3,0.3c0.3,0,0.7-0.2,0.8-0.1
c0,0.1-0.2,0.4-0.1,0.6c0,0.6,0.9,2.8,2,3c1-0.2,2-2.4,2-3c0-0.2-0.2-0.5-0.1-0.6c0-0.1,0.5,0.1,0.8,0.1s0.8-0.3,1.3-0.3
c0.8,0,0.8,0.4,1,0.5c0.1,0,0.3,0,0.5,0.1s0.6,0.4,0.4,0.7c-0.3,0-0.5,0-0.7,0c-0.3,0-0.6,0.3-0.6,0.5c0,0,0.7,0.1,1.1,0.1
c1.1,0,0.8-0.7,0.8-0.7c0-0.1,0.6,0,0.6,0.5c0,0.4-0.7,0.7-1.4,0.6c-0.5,0-1.1-0.3-1.2-0.3c-0.1,0-0.4,0.7,0.1,0.7
c0.2,0,0.4-0.1,0.4-0.1c0.1,0,0.3,0.3-0.4,0.5c-1,0.2-1.5,0.2-1.8,0.9c-0.2,0.5-0.1,1,0.2,1.5c0.8,1.3,3.2,1.1,3.8,0.3
c0.2-0.3,0.2-0.6,0-0.6c-0.7,0.1-1.7,0.2-1.8-0.7c0-0.7,1.2-0.7,2.4-1.9c0.9-0.9,1.1-1.5,1.1-2c0-0.1,0-0.6,0-0.6
c0-0.1,0.4,0.4,0.4,0.5c0.3,0.7,0.1,1.4,0.1,1.4c0.3-0.2,0.6-0.6,0.7-0.9c0.1-0.2,0.2-0.4,0.3-0.5c0.1-0.2,0.1,0.5,0,0.9
c-0.1,0.7-0.7,1.3-0.7,1.3c1.2,0,1.7-1.4,1.7-1.4c0.9,1.1-0.5,2.5-0.5,2.5s0.2,0.1,0.5,0s0.6-0.2,0.8-0.4c0.2-0.3,0,0.6-0.6,1
c-1,0.6-2,0.7-2,0.7c0.2,0.5,1,0.6,1.5,0.5c0.7-0.1,1.2-0.5,1.2-0.5c0.7,1.3-1.2,2.2-1.3,2.2c0.5,0.4,1,0.6,1.2,0.6
c0.1,0,0.2,0,0.3,0c0.1,0-0.2,0.3-0.7,0.3c-1.2-0.1-2-0.4-2-0.4c1.2,2.5,2.6,2.4,2.8,2.4c0,0,0,1.1-1.6,1.1c-0.1,0-0.2,0-0.2,0
c-0.6-0.1-1.1-0.5-1.1-0.5c0,0.8,1.9,1.7,1.9,1.7c0.1,0.1-0.4,0.3-1.1,0.2c-0.3-0.1-0.7-0.2-1.1-0.4c-0.8-0.6-1.5-1.8-1.6-1.9
c-0.5,1.9,1.1,2.8,1.5,2.9c0.2,0-0.4,0.3-0.9,0.2c-0.1,0-0.2,0-0.3-0.1c-1.1-0.5-1.7-1.6-1.7-1.7c0,0.1-0.2,1,0.6,2c0,0,0,0-0.1,0
c-0.1,0-0.3-0.1-0.5-0.2c-0.6-0.4-1.1-1.1-1.2-2c-0.5,0.1-0.9,0.6-1.1,1s-0.2,0.8,0,1.2c0.3,0.5,0.6,0.7,0.9,0.8s0.6,0.1,1,0.1
c0.3,0,0.5,0.1,0.7,0.4c0.3,0.3,0.1,1.2-0.4,1c0,0,0.2-0.4-0.2-0.7c-0.1-0.1-0.2-0.1-0.3-0.1c-0.2,0-0.5,0.1-0.6,0.3
c-0.3,0.5,0.8,1.2,1.3,1.4c0,0,0.3,0.2,0.6,0.2c0.3,0,0.6,0,0.7-0.6c-0.1-0.1-0.4-0.2-0.4-0.7c0-0.4,0.3-0.6,0.3-0.6
c0.1-0.5,0.9-0.5,0.9-0.5c0.1,0,0,0.1,0,0.1c-0.2,0.1-0.3,0.2-0.2,0.4c0,0.1,0.4,0.4,0.1,1.2c0.1,0,0.4,0,0.5-0.5
c0-0.2-0.1-0.4,0-0.6c0.1-0.1,0.3-0.3,0.5-0.2c0.2-0.1,0.4-0.1,0.6-0.1c0.4,0.1,0.5,0.5,0.5,0.5l0,0h-0.1c-0.2,0-0.5,0-0.4,0.1
c0,0.1,0.1,0.2-0.1,0.5c-0.3,0.4-1,0.1-0.8,1c0,0,0.2-0.3,0.6-0.2c0.3,0,0.6,0.4,0.6,0.9c0,0.2-0.1,0.4-0.3,0.5c0,0,0,0,0-0.1
c0.1-0.2,0-0.4-0.2-0.4c-0.3,0-0.2,0.2-0.6,0.2c-0.1,0-0.1,0-0.1,0c-0.2,0-0.2-0.1-0.3-0.1h-0.1c-0.5,0.1-1.2,0.4-1.4,0.8
c-0.2,0.4,0,0.5-0.2,0.8s-0.4,0.3-0.4,0.3s0,0.1,0,0.2C38.5,60.7,38.5,60.8,38.5,60.8 M37.2,61.3c0.3-0.1,0.7-0.2,1-0.4
c0-0.1-0.1-0.1-0.1-0.3c0-0.1,0-0.2,0-0.3c0,0-0.3-0.3-0.2-0.6c0.2-0.4,0.5-0.3,0.4-0.8c-0.2-0.6-1.3-1.5-2-1.6
c-0.2,0-0.3,0-0.4,0.1c-0.2,0.2-0.3,0.8,0.5,0.9c-0.2,0.3-0.4,0.4-0.8,0.3c-0.3-0.1-0.7-0.6-0.6-1.3c0.2-0.9-0.4-1.6-0.9-1.7
c-0.1,0-0.1,0-0.2,0c-0.6,0.1-0.5,1-0.5,1l0.3,3.6c0,0.1,0,0.3,0.1,0.5c0.2,0.3,0.6,0.7,1.2,0.9c0.5,0.1,0.9,0,1.1-0.2
c0-0.1,0.3-0.4,0.1-0.7c0-0.1-0.1-0.2-0.2-0.2h-0.1c-0.2,0-0.3,0.1-0.3,0.1c-0.1-0.2,0-0.7,0.7-0.6c0.4,0.1,0.6,0.4,0.6,0.7
s-0.1,0.7-0.1,0.7S37,61.3,37.2,61.3 M35.4,62.6c0-0.1,0-0.2,0-0.3c-0.5-0.1-1-0.2-1.3-0.4c-0.6-0.3-0.8-0.6-0.8-0.6s0,0,0,0.3
c0.1,1,0.7,1.1,1.4,1.2c0.3,0.1,0.6,0.3,0.8,0.5v-0.7H35.4z M57.9,82.8c-0.1,0.2-0.1,0.6,0,0.8c0.5,0.7,2.6,0.9,3.5,0
C60.3,83.4,59.1,83.1,57.9,82.8 M63.7,80.9c0.3,0.4,0.7,0.7,1,0.8c1-0.2,2-2.4,2-3c0-0.2-0.2-0.5-0.1-0.6c0-0.1,0.5,0.1,0.8,0.1
c0.3,0,0.9-0.3,1.3-0.3c0.8,0,0.8,0.4,1,0.5c0.1,0,0.3,0,0.5,0.1c0.2,0.1,0.6,0.4,0.4,0.7c-0.4,0-0.5,0-0.7,0
c-0.3,0-0.6,0.3-0.6,0.5c0,0,0.7,0.1,1.1,0.1c1.1,0,0.8-0.7,0.8-0.7c0-0.1,0.6,0,0.6,0.5c0,0.4-0.7,0.7-1.4,0.6
c-0.5,0-1.1-0.3-1.2-0.3s-0.4,0.7,0.1,0.7c0.2,0,0.4-0.1,0.4-0.1c0.1,0,0.3,0.3-0.4,0.5c-1,0.2-1.5,0.2-1.8,0.9
c-0.2,0.5-0.1,1,0.2,1.5c0.8,1.3,3.2,1.1,3.8,0.3c0.2-0.3,0.2-0.6,0-0.6c-0.7,0.1-1.7,0.2-1.8-0.7c0-0.7,1.2-0.7,2.4-1.9
c0.9-0.9,1.1-1.5,1.1-2c0-0.1,0-0.6,0-0.6c0-0.1,0.4,0.4,0.4,0.5c0.3,0.7,0.1,1.4,0.1,1.4c0.3-0.2,0.6-0.6,0.7-0.9
c0.1-0.2,0.2-0.4,0.3-0.5c0.1-0.2,0.1,0.5,0,0.9C74.6,80,74,80.6,74,80.6c1.2,0,1.7-1.4,1.7-1.4c0.9,1.1-0.5,2.5-0.5,2.5
s0.2,0.1,0.5,0c0.3-0.1,0.6-0.2,0.8-0.4c0.2-0.3,0,0.6-0.6,1c-1,0.6-2,0.7-2,0.7c0.2,0.5,1,0.6,1.5,0.5c0.7-0.1,1.2-0.5,1.2-0.5
c0.7,1.3-1.2,2.2-1.3,2.2c0.5,0.4,1,0.6,1.2,0.6c0.1,0,0.2,0,0.3,0s-0.2,0.3-0.7,0.3c-0.9-0.1-1.7-0.4-1.7-0.4
c1.2,2.5,2.6,2.4,2.8,2.4c0,0,0,1.1-1.6,1.1c-0.1,0-0.2,0-0.2,0c-0.6-0.1-1.1-0.5-1.1-0.5c0,0.8,1.9,1.7,1.9,1.7
c0.1,0.1-0.4,0.3-1.1,0.2c-0.3-0.1-0.7-0.2-1.1-0.4c-0.8-0.6-1.5-1.8-1.6-1.9c-0.5,1.9,1.1,2.8,1.5,2.9c0.2,0-0.4,0.3-0.9,0.2
c-0.1,0-0.2,0-0.3-0.1c-1.1-0.5-1.7-1.6-1.7-1.7c0,0.1-0.2,1,0.6,2c0,0,0,0-0.1,0s-0.3-0.1-0.5-0.2c-0.6-0.4-1.1-1.1-1.2-2
c-0.5,0.1-0.9,0.6-1.1,1c-0.2,0.4-0.2,0.8,0,1.2c0.3,0.5,0.6,0.7,0.9,0.8c0.3,0.1,0.6,0,1,0.1c0.3,0,0.5,0.1,0.7,0.4
c0.3,0.3,0.1,1.2-0.4,1c0,0,0.2-0.4-0.2-0.7c-0.1-0.1-0.2-0.1-0.3-0.2c-0.2,0-0.5,0.1-0.6,0.3c-0.3,0.5,0.8,1.2,1.3,1.4
c0,0,0.3,0.2,0.6,0.2c0.3,0,0.6,0,0.7-0.6c-0.1-0.1-0.4-0.2-0.4-0.7c0-0.4,0.3-0.6,0.3-0.6c0.1-0.5,0.9-0.5,0.9-0.5
c0.1,0,0,0.1,0,0.1c-0.4,0.1-0.5,0.3-0.4,0.4c0,0.1,0.4,0.4,0.1,1.2c0.1,0,0.4,0,0.5-0.5c0-0.2-0.1-0.4,0-0.6s0.3-0.3,0.5-0.2
c0.2-0.1,0.4-0.1,0.6-0.1c0.4,0.1,0.5,0.5,0.5,0.5s0,0.1,0,0h-0.1c-0.2,0-0.5,0-0.4,0.1c0,0.1,0.1,0.2-0.1,0.5
c-0.3,0.4-1,0.1-0.8,1c0,0,0.2-0.3,0.6-0.2c0.3,0,0.6,0.4,0.6,0.9c0,0.2-0.1,0.4-0.3,0.5c0,0,0,0,0-0.1c0.1-0.2,0-0.4-0.2-0.4
c-0.3,0-0.2,0.2-0.6,0.2c-0.1,0-0.1,0-0.1,0c-0.1,0-0.2-0.1-0.3-0.1h-0.1c-0.5,0.1-1.2,0.4-1.4,0.8c-0.2,0.4,0,0.5-0.2,0.8
c-0.2,0.3-0.4,0.3-0.4,0.3s0,0.1,0,0.2s0.1,0.3,0.3,0.4c0,0,0.1,0,0,0s-0.2,0.1-0.3,0c-0.1,0-0.3-0.1-0.4-0.4c0-0.1,0-0.2,0-0.3
c0,0-0.3-0.3-0.2-0.6c0.2-0.4,0.5-0.3,0.4-0.8c-0.2-0.6-1.3-1.5-2-1.6c-0.2,0-0.3,0-0.4,0.1c-0.2,0.2-0.3,0.8,0.5,0.9
c-0.1,0.3-0.4,0.4-0.8,0.3c-0.3-0.1-0.7-0.6-0.6-1.3c0.2-0.9-0.4-1.6-0.9-1.7c-0.1,0-0.2,0-0.2,0c-0.6,0.1-0.5,1-0.5,1l0.3,3.6
c0,0.1,0,0.3,0.1,0.5c0.2,0.3,0.6,0.7,1.2,0.9c0.5,0.1,0.9,0,1.1-0.2c0-0.1,0.3-0.4,0.1-0.7c0-0.1-0.1-0.2-0.2-0.2h-0.1
c-0.2,0-0.3,0.1-0.3,0.1c-0.1-0.2,0-0.7,0.7-0.6c0.4,0.1,0.6,0.4,0.6,0.7c0,0.3-0.1,0.7-0.1,0.7s0.4-0.1,0.8-0.1h0.1
c0.4,0.1,0.6,0.3,0.7,0.7c0.1,0.4-0.3,0.7-0.3,0.7s0.1-0.3-0.2-0.5c-0.1,0-0.2-0.1-0.3-0.1c-0.4-0.1-0.7,0.4-0.6,0.7
c0,0.5-0.1,1-0.5,1c-0.1,0-0.2,0-0.2,0c-0.3,0-0.3-0.2-0.3-0.2s0.4,0,0.4-0.4c0-1-1.7-1-2.4-1.3c-0.6-0.3-0.8-0.6-0.8-0.6
s0,0,0,0.3c0.1,1,0.7,1.1,1.4,1.2c0.4,0.1,0.9,0.5,0.9,1.1c0,0.8-0.6,0.7-0.6,0.7s0.2-0.7-0.4-0.8c0,0-0.1,0-0.2,0
c-0.3,0-0.5,0.2-0.7,0.3c-0.3,0.3-1.3,1.4-1.5,1.6c-0.2-0.2-1.1-1.3-1.5-1.6c-0.2-0.2-0.4-0.3-0.7-0.3c-0.1,0-0.1,0-0.2,0
c-0.6,0.1-0.4,0.8-0.4,0.8s-0.6,0.1-0.6-0.7c0-0.6,0.5-0.9,0.9-1.1c0.6-0.1,1.3-0.2,1.4-1.2c0-0.2,0-0.3,0-0.3s-0.2,0.3-0.8,0.6
c-0.7,0.3-2.4,0.3-2.4,1.3c0,0.4,0.4,0.4,0.4,0.4s0,0.2-0.3,0.2c-0.1,0-0.1,0-0.2,0c-0.4-0.1-0.5-0.5-0.5-1c0-0.3-0.2-0.8-0.6-0.7
c-0.1,0-0.2,0-0.3,0.1c-0.3,0.2-0.2,0.5-0.2,0.5s-0.4-0.2-0.3-0.7c0.1-0.4,0.3-0.6,0.7-0.7h0.1c0.5-0.1,0.8,0.1,0.8,0.1
S60,98.3,60,97.9c0-0.3,0.2-0.6,0.6-0.7c0.7-0.1,0.8,0.3,0.7,0.6c0,0-0.2-0.2-0.3-0.1h-0.1c-0.1,0.1-0.2,0.1-0.2,0.2
c-0.1,0.1,0.1,0.4,0.1,0.4c0.1,0.2,0.5,0.3,1.1,0.2c0.6-0.1,1-0.5,1.2-0.9c0.1-0.2,0.2-0.3,0.1-0.5l0.3-3.6c0,0,0.1-0.9-0.5-1
c-0.1,0-0.1,0-0.2,0c-0.5,0.1-1.1,0.8-0.9,1.7c0.1,0.7-0.2,1.2-0.6,1.3c-0.4,0.1-0.7,0-0.8-0.3c0.7-0.1,0.7-0.6,0.5-0.9
c-0.1-0.1-0.2-0.1-0.4-0.1c-0.7,0.1-1.8,1.1-2,1.6s0.2,0.4,0.4,0.8c0.1,0.3-0.2,0.6-0.2,0.6c0,0.1,0,0.2,0,0.3
c-0.1,0.3-0.2,0.4-0.4,0.4c-0.1,0-0.2,0-0.3,0c0.2-0.1,0.2-0.3,0.3-0.4c0-0.1,0-0.2,0-0.2s-0.2,0-0.4-0.3s0-0.4-0.2-0.8
s-0.9-0.7-1.4-0.8h-0.1c-0.1,0-0.2,0.1-0.3,0.1h-0.1c-0.4,0-0.3-0.2-0.6-0.2c-0.2,0-0.3,0.2-0.2,0.4v0.1c-0.2-0.1-0.3-0.3-0.3-0.5
c0-0.5,0.3-0.9,0.6-0.9c0.4,0,0.5,0.2,0.6,0.2c0.2-0.9-0.5-0.6-0.8-1c-0.2-0.3-0.1-0.4-0.1-0.5c0-0.2-0.2-0.2-0.4-0.1
c-0.1,0-0.1,0-0.1,0s0.1-0.4,0.5-0.5c0.1,0,0.3,0,0.6,0.1c0.2-0.1,0.4,0,0.5,0.2s0,0.4,0,0.6c0.1,0.6,0.4,0.6,0.5,0.5
c-0.3-0.8,0.1-1.1,0.1-1.2s0-0.3-0.2-0.4c0,0-0.1-0.1,0-0.1c0,0,0.8,0,0.9,0.5c0,0,0.3,0.2,0.3,0.6c0,0.5-0.3,0.6-0.4,0.7
c0.1,0.6,0.4,0.6,0.7,0.6s0.6-0.2,0.6-0.2c0.5-0.2,1.6-0.9,1.3-1.4c-0.1-0.2-0.3-0.4-0.6-0.3c-0.1,0-0.2,0.1-0.3,0.2
c-0.3,0.3-0.2,0.7-0.2,0.7c-0.5,0.1-0.7-0.7-0.4-1c0.2-0.2,0.5-0.3,0.7-0.4c0.3-0.1,0.6,0,1-0.1s0.7-0.3,0.9-0.8
c0.2-0.3,0.2-0.8,0-1.2c-0.2-0.4-0.6-0.9-1.1-1c-0.1,0.9-0.6,1.6-1.2,2c-0.1,0.1-0.3,0.2-0.5,0.2c-0.1,0-0.2,0-0.1,0
c0.8-0.9,0.6-1.9,0.6-2c-0.1,0.1-0.7,1.2-1.7,1.7c-0.1,0-0.2,0.1-0.3,0.1c-0.6,0.1-1.2-0.2-0.9-0.2c0.4-0.1,1.9-1,1.5-2.9
c-0.1,0.1-0.7,1.3-1.6,1.9c-0.4,0.2-0.7,0.4-1.1,0.4c-0.7,0.1-1.2-0.1-1.1-0.2c0,0,1.8-0.9,1.9-1.7c-0.1,0-0.6,0.4-1.1,0.5
c-0.1,0-0.2,0-0.2,0c-1.6,0-1.6-1.1-1.6-1.1c0.1,0,1.6,0.1,2.8-2.4c0,0-0.8,0.3-1.7,0.4c-0.5,0.1-0.8-0.3-0.7-0.3s0.2,0,0.3,0
c0.3,0,0.7-0.2,1.2-0.6c-0.1-0.1-2.1-0.9-1.3-2.2c0,0,0.5,0.5,1.2,0.5c0.5,0,1.3-0.1,1.5-0.5c0,0-1-0.1-2-0.7c0,0-0.1,0-0.1-0.1
c-0.5,0-0.9,0-1.4,0.1c-0.3,1.3-1.4,2.2-2.6,2.2c-1.3,0-2.3-0.9-2.6-2.2c-0.8-0.1-1.6-0.2-2.4-0.1L26.9,101c1.7,1.6,3.6,3,5.6,4.1
l16.8-17.9V97l-10.5,11.2c3.8,1.3,7.7,1.9,11.1,1.9c13.1,0,32.6-8.6,32.2-32.5V62.1L73.3,71h-8.9l17.3-18.4v-10L63.5,61.8
c0.1,0.1,0.1,0.1,0.1,0.2L63.7,80.9z M61.7,86.6h6v-2.4h-6V86.6z M64.7,91.3c2.7,0,2.9-2.5,2.9-2.5h-5.8
C61.8,88.8,62,91.3,64.7,91.3 M29.2,49.6h6v-2.4h-6V49.6z M32.2,54.3c2.7,0,2.9-2.5,2.9-2.5h-5.8C29.3,51.8,29.5,54.3,32.2,54.3
M48.2,81.8c0,0.7,0.6,1.3,1.3,1.3s1.3-0.6,1.3-1.3c0-0.7-0.6-1.3-1.3-1.3C48.8,80.6,48.2,81.1,48.2,81.8 M36.2,62.5v19.6
c0,0,0.2,0.3,1.5-0.1c1.5-0.4,3.4-2.3,6-2.9c2-0.4,4.6,0.2,5.2,0.6V60.1c0,0-1.2-1.2-3.1-1.2c-1.9,0-5.1,1.7-6.4,2.3
c-1.1,0.5-2.2,0.9-3,1C36.1,62.3,36.2,62.5,36.2,62.5 M53.4,79.1c3.4,0,5.2,2.1,6.3,2.6c2.7,1.1,3.1,0.5,3.1,0.5V62.5
c0-0.2-0.3-0.2-0.3-0.2s-2.6-0.4-3.5-1c-0.9-0.5-4.1-2.4-6.4-2.4c-2.3,0-2.8,1-2.8,1v19.9C49.9,79.8,51,79.1,53.4,79.1"/>
</g>
</svg>
Side by Side

After

Width:  |  Height:  |  Size: 30 KiB

3890
logo_umcg.svg Normal file
View File

File diff suppressed because it is too large Load Diff
Side by Side

After

Width:  |  Height:  |  Size: 343 KiB

25
news/index.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -53,18 +53,18 @@
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="2.1.1.9066" id="amr-2119066">AMR 2.1.1.9066<a class="anchor" aria-label="anchor" href="#amr-2119066"></a></h2>
<h2 class="pkg-version" data-toc-text="2.1.1.9073" id="amr-2119073">AMR 2.1.1.9073<a class="anchor" aria-label="anchor" href="#amr-2119073"></a></h2>
<p><em>(this beta version will eventually become v3.0. We’re happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using <a href="https://msberends.github.io/AMR/#latest-development-version">the instructions here</a>.)</em></p>
<div class="section level5">
<h5 id="a-new-milestone-amr-v30-with-one-health-support--human--veterinary--environmental-2-1-1-9066">A New Milestone: AMR v3.0 with One Health Support (= Human + Veterinary + Environmental)<a class="anchor" aria-label="anchor" href="#a-new-milestone-amr-v30-with-one-health-support--human--veterinary--environmental-2-1-1-9066"></a></h5>
<p>This package now supports not only tools for AMR data analysis in clinical settings, but also for veterinary and environmental microbiology. This was made possible through a collaboration with the <a href="https://www.upei.ca/avc" class="external-link">University of Prince Edward Island</a>, Canada. To celebrate this great improvement of the package, we also updated the package logo to reflect this change.</p>
<h5 id="a-new-milestone-amr-v30-with-one-health-support--human--veterinary--environmental-2-1-1-9073">A New Milestone: AMR v3.0 with One Health Support (= Human + Veterinary + Environmental)<a class="anchor" aria-label="anchor" href="#a-new-milestone-amr-v30-with-one-health-support--human--veterinary--environmental-2-1-1-9073"></a></h5>
<p>This package now supports not only tools for AMR data analysis in clinical settings, but also for veterinary and environmental microbiology. This was made possible through a collaboration with the <a href="https://www.upei.ca/avc" class="external-link">University of Prince Edward Island’s Atlantic Veterinary College</a>, Canada. To celebrate this great improvement of the package, we also updated the package logo to reflect this change.</p>
</div>
<div class="section level3">
<h3 id="breaking-2-1-1-9066">Breaking<a class="anchor" aria-label="anchor" href="#breaking-2-1-1-9066"></a></h3>
<h3 id="breaking-2-1-1-9073">Breaking<a class="anchor" aria-label="anchor" href="#breaking-2-1-1-9073"></a></h3>
<ul><li>Removed all functions and references that used the deprecated <code>rsi</code> class, which were all replaced with their <code>sir</code> equivalents over a year ago</li>
</ul></div>
<div class="section level3">
<h3 id="new-2-1-1-9066">New<a class="anchor" aria-label="anchor" href="#new-2-1-1-9066"></a></h3>
<h3 id="new-2-1-1-9073">New<a class="anchor" aria-label="anchor" href="#new-2-1-1-9073"></a></h3>
<ul><li>One Health implementation
<ul><li>Function <code><a href="../reference/as.sir.html">as.sir()</a></code> now has extensive support for animal breakpoints from CLSI. Use <code>breakpoint_type = "animal"</code> and set the <code>host</code> argument to a variable that contains animal species names.</li>
<li>The <code>clinical_breakpoints</code> data set contains all these breakpoints, and can be downloaded on our <a href="https://msberends.github.io/AMR/articles/datasets.html">download page</a>.</li>
@ -92,12 +92,16 @@
</ul></li>
<li>We’ve welcomed over 2,000 records from 2023, over 900 from 2024, and many thousands of new fungi</li>
</ul></li>
<li>Improved support for mycologists:
<ul><li>The <code><a href="../reference/as.mo.html">as.mo()</a></code> function now includes a new argument, <code>only_fungi</code> (TRUE/FALSE), which limits the results to fungi only. Normally, bacteria are often prioritised by the algorithm, but setting <code>only_fungi = TRUE</code> ensures only fungi are returned.</li>
<li>You can also set this globally using the new R option <code>AMR_only_fungi</code>, e.g., <code>options(AMR_only_fungi = TRUE)</code>.</li>
</ul></li>
<li>Other
<ul><li>New function <code><a href="../reference/mo_property.html">mo_group_members()</a></code> to retrieve the member microorganisms of a microorganism group. For example, <code>mo_group_members("Strep group C")</code> returns a vector of all microorganisms that are in that group.</li>
</ul></li>
</ul></div>
<div class="section level3">
<h3 id="changed-2-1-1-9066">Changed<a class="anchor" aria-label="anchor" href="#changed-2-1-1-9066"></a></h3>
<h3 id="changed-2-1-1-9073">Changed<a class="anchor" aria-label="anchor" href="#changed-2-1-1-9073"></a></h3>
<ul><li>SIR interpretation
<ul><li>It is now possible to use column names for argument <code>ab</code>, <code>mo</code>, and <code>uti</code>: <code>as.sir(..., ab = "column1", mo = "column2", uti = "column3")</code>. This greatly improves the flexibility for users.</li>
<li>Users can now set their own criteria (using regular expressions) as to what should be considered S, I, R, SDD, and NI.</li>
@ -137,8 +141,9 @@
<li>Fixed a bug for when <code><a href="../reference/antibiogram.html">antibiogram()</a></code> returns an empty data set</li>
</ul></div>
<div class="section level3">
<h3 id="other-2-1-1-9066">Other<a class="anchor" aria-label="anchor" href="#other-2-1-1-9066"></a></h3>
<ul><li>Added Jordan Stull, Matthew Saab, and Javier Sanchez as contributors, to thank them for their valuable input</li>
<h3 id="other-2-1-1-9073">Other<a class="anchor" aria-label="anchor" href="#other-2-1-1-9073"></a></h3>
<ul><li>Greatly updated and expanded documentation</li>
<li>Added Jordan Stull, Matthew Saab, and Javier Sanchez as contributors, to thank them for their valuable input</li>
</ul></div>
</div>
<div class="section level2">
@ -311,7 +316,7 @@
</ul></li>
<li>Argument <code>combine_IR</code> has been removed from this package (affecting functions <code><a href="../reference/count.html">count_df()</a></code>, <code><a href="../reference/proportion.html">proportion_df()</a></code>, and <code><a href="../reference/proportion.html">sir_df()</a></code> and some plotting functions), since it was replaced with <code>combine_SI</code> three years ago</li>
<li>Using <code>units</code> in <code>ab_ddd(..., units = "...")</code> had been deprecated for some time and is now not supported anymore. Use <code><a href="../reference/ab_property.html">ab_ddd_units()</a></code> instead.</li>
<li>Support for <code>data.frame</code>-enhancing R packages, more specifically: <code><a href="https://rdatatable.gitlab.io/data.table/reference/data.table.html" class="external-link">data.table::data.table</a></code>, <code><a href="https://sfirke.github.io/janitor/reference/tabyl.html" class="external-link">janitor::tabyl</a></code>, <code><a href="https://tibble.tidyverse.org/reference/tibble.html" class="external-link">tibble::tibble</a></code>, and <code><a href="https://tsibble.tidyverts.org/reference/tsibble.html" class="external-link">tsibble::tsibble</a></code>. AMR package functions that have a data set as output (such as <code><a href="../reference/proportion.html">sir_df()</a></code> and <code><a href="../reference/bug_drug_combinations.html">bug_drug_combinations()</a></code>), will now return the same data type as the input.</li>
<li>Support for <code>data.frame</code>-enhancing R packages, more specifically: <code><a href="https://rdatatable.gitlab.io/data.table/reference/data.table.html" class="external-link">data.table::data.table</a></code>, <code>janitor::tabyl</code>, <code><a href="https://tibble.tidyverse.org/reference/tibble.html" class="external-link">tibble::tibble</a></code>, and <code>tsibble::tsibble</code>. AMR package functions that have a data set as output (such as <code><a href="../reference/proportion.html">sir_df()</a></code> and <code><a href="../reference/bug_drug_combinations.html">bug_drug_combinations()</a></code>), will now return the same data type as the input.</li>
<li>All data sets in this package are now a <code>tibble</code>, instead of base R <code>data.frame</code>s. Older R versions are still supported, even if they do not support <code>tibble</code>s.</li>
<li>Our data sets are now also continually exported to <strong>Apache Feather and Apache Parquet formats</strong>. You can find more info <a href="https://msberends.github.io/AMR/articles/datasets.html">in this article on our website</a>.</li>
<li>For <code><a href="../reference/as.sir.html">as.sir()</a></code>:

8
pkgdown.js
View File

@ -152,3 +152,11 @@ async function searchFuse(query, callback) {
});
});
})(window.jQuery || window.$)
document.addEventListener('keydown', function(event) {
// Check if the pressed key is '/'
if (event.key === '/') {
event.preventDefault(); // Prevent any default action associated with the '/' key
document.getElementById('search-input').focus(); // Set focus to the search input
}
});

4
pkgdown.yml
View File

@ -1,5 +1,5 @@
pandoc: 3.1.11
pkgdown: 2.1.0
pkgdown: 2.1.1
pkgdown_sha: ~
articles:
AMR: AMR.html
@ -11,7 +11,7 @@ articles:
resistance_predict: resistance_predict.html
welcome_to_AMR: welcome_to_AMR.html
WHONET: WHONET.html
last_built: 2024-07-16T14:13Z
last_built: 2024-09-19T12:02Z
urls:
reference: https://msberends.github.io/AMR/reference
article: https://msberends.github.io/AMR/articles

2
reference/AMR-options.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/AMR.html
View File

@ -21,7 +21,7 @@ The AMR package is available in English, Chinese, Czech, Danish, Dutch, Finnish,
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

BIN
reference/Rplot001.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 1011 B

BIN
reference/Rplot002.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 24 KiB

BIN
reference/Rplot003.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 17 KiB

BIN
reference/Rplot004.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 23 KiB

BIN
reference/Rplot005.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 13 KiB

BIN
reference/Rplot006.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 13 KiB

BIN
reference/Rplot007.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.2 KiB

BIN
reference/Rplot008.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.8 KiB

BIN
reference/Rplot009.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 9.6 KiB

BIN
reference/Rplot010.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.6 KiB

BIN
reference/Rplot011.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 13 KiB

BIN
reference/Rplot012.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 18 KiB

BIN
reference/Rplot013.png
View File

Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.0 KiB

2
reference/WHOCC.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/WHONET.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/ab_from_text.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/ab_property.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/add_custom_antimicrobials.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

5
reference/add_custom_microorganisms.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -187,6 +187,9 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> $lpsn</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $mycobank</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $gbif</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>

22
reference/age.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -116,16 +116,16 @@
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">df</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> birth_date age age_exact age_at_y2k</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1965-12-05 58 58.61202 34</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 1980-03-01 44 44.37432 19</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 1949-11-01 74 74.70492 50</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 1947-02-14 77 77.41803 52</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 1940-02-19 84 84.40437 59</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 1988-01-10 36 36.51366 11</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 1997-08-27 26 26.88525 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 1978-01-26 46 46.46995 21</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 1972-06-17 52 52.07923 27</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 1986-08-10 37 37.93169 13</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1965-12-05 58 58.78962 34</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 1980-03-01 44 44.55191 19</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 1949-11-01 74 74.88251 50</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 1947-02-14 77 77.59563 52</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 1940-02-19 84 84.58197 59</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 1988-01-10 36 36.69126 11</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 1997-08-27 27 27.06284 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 1978-01-26 46 46.64754 21</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 1972-06-17 52 52.25683 27</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 1986-08-10 38 38.10929 13</span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>

BIN
reference/age_groups-1.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 42 KiB

After

Width:  |  Height:  |  Size: 42 KiB

2
reference/age_groups.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

BIN
reference/antibiogram-1.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 24 KiB

After

Width:  |  Height:  |  Size: 24 KiB

BIN
reference/antibiogram-2.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 35 KiB

After

Width:  |  Height:  |  Size: 36 KiB

2
reference/antibiogram.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/antibiotic_class_selectors.html
View File

@ -9,7 +9,7 @@ In short, if you have a column name that resembles an antimicrobial drug, it wil
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/antibiotics.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/as.ab.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/as.av.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

4
reference/as.disk.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -132,6 +132,7 @@
<span class="r-in"><span> ab <span class="op">=</span> <span class="st">"ampicillin"</span>, <span class="co"># and `ab` with as.ab()</span></span></span>
<span class="r-in"><span> guideline <span class="op">=</span> <span class="st">"EUCAST"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'ampicillin' (AMP), EUCAST 2024...</span>
@ -141,6 +142,7 @@
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># interpret whole data set, pretend to be all from urinary tract infections:</span></span></span>
<span class="r-in"><span><span class="fu"><a href="as.sir.html">as.sir</a></span><span class="op">(</span><span class="va">df</span>, uti <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: column 'AMP' (ampicillin), EUCAST</span>

BIN
reference/as.mic-2.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 34 KiB

After

Width:  |  Height:  |  Size: 34 KiB

BIN
reference/as.mic-3.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 51 KiB

After

Width:  |  Height:  |  Size: 51 KiB

BIN
reference/as.mic-4.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 50 KiB

After

Width:  |  Height:  |  Size: 49 KiB

4
reference/as.mic.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -181,6 +181,7 @@
<span class="r-in"><span> ab <span class="op">=</span> <span class="st">"AMX"</span>,</span></span>
<span class="r-in"><span> guideline <span class="op">=</span> <span class="st">"EUCAST"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'AMX' (amoxicillin), EUCAST 2024...</span>
@ -194,6 +195,7 @@
<span class="r-in"><span> ab <span class="op">=</span> <span class="st">"AMX"</span>,</span></span>
<span class="r-in"><span> guideline <span class="op">=</span> <span class="st">"EUCAST"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'AMX' (amoxicillin), EUCAST 2024...</span>

73
reference/as.mo.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -68,6 +68,7 @@
<span> reference_df <span class="op">=</span> <span class="fu"><a href="mo_source.html">get_mo_source</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> ignore_pattern <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_ignore_pattern"</span>, <span class="cn">NULL</span><span class="op">)</span>,</span>
<span> cleaning_regex <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_cleaning_regex"</span>, <span class="fu">mo_cleaning_regex</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>,</span>
<span> only_fungi <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_only_fungi"</span>, <span class="cn">FALSE</span><span class="op">)</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> info <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> <span class="va">...</span></span>
@ -124,12 +125,16 @@
<dd><p>a Perl-compatible <a href="https://rdrr.io/r/base/regex.html" class="external-link">regular expression</a> (case-insensitive) to clean the input of <code>x</code>. Every matched part in <code>x</code> will be removed. At default, this is the outcome of <code>mo_cleaning_regex()</code>, which removes texts between brackets and texts such as "species" and "serovar". The default can be set with the <a href="AMR-options.html">package option</a> <code><a href="AMR-options.html">AMR_cleaning_regex</a></code>.</p></dd>
<dt id="arg-only-fungi">only_fungi<a class="anchor" aria-label="anchor" href="#arg-only-fungi"></a></dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate if only fungi must be found, making sure that e.g. misspellings always return records from the kingdom of Fungi. This can be set globally for <a href="mo_property.html">all microorganism functions</a> with the <a href="AMR-options.html">package option</a> <code><a href="AMR-options.html">AMR_only_fungi</a></code>, i.e. <code>options(AMR_only_fungi = TRUE)</code>.</p></dd>
<dt id="arg-language">language<a class="anchor" aria-label="anchor" href="#arg-language"></a></dt>
<dd><p>language to translate text like "no growth", which defaults to the system language (see <code><a href="translate.html">get_AMR_locale()</a></code>)</p></dd>
<dt id="arg-info">info<a class="anchor" aria-label="anchor" href="#arg-info"></a></dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate if a progress bar should be printed if more than 25 items are to be coerced - the default is <code>TRUE</code> only in interactive mode</p></dd>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate that info must be printed, e.g. a progress bar when more than 25 items are to be coerced, or a list with old taxonomic names. The default is <code>TRUE</code> only in interactive mode.</p></dd>
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
@ -142,7 +147,7 @@
</div>
<div class="section level2">
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
<p>A microorganism (MO) code from this package (class: <code>mo</code>) is human readable and typically looks like these examples:</p>
<p>A microorganism (MO) code from this package (class: <code>mo</code>) is human-readable and typically looks like these examples:</p>
<p></p><div class="sourceCode"><pre><code><span id="cb1-1"><a href="#cb1-1" tabindex="-1"></a> Code Full name</span>
<span id="cb1-2"><a href="#cb1-2" tabindex="-1"></a> <span class="sc">---------------</span> <span class="sc">--------------------------------------</span></span>
<span id="cb1-3"><a href="#cb1-3" tabindex="-1"></a> B_KLBSL Klebsiella</span>
@ -153,50 +158,76 @@
<span id="cb1-8"><a href="#cb1-8" tabindex="-1"></a> <span class="er">|</span> <span class="er">|</span> <span class="er">|</span> \<span class="sc">--</span><span class="ot">-&gt;</span> subspecies, a <span class="dv">3-5</span> letter acronym</span>
<span id="cb1-9"><a href="#cb1-9" tabindex="-1"></a> <span class="sc">|</span> <span class="er">|</span> \<span class="sc">---</span><span class="ot">-&gt;</span> species, a <span class="dv">3-6</span> letter acronym</span>
<span id="cb1-10"><a href="#cb1-10" tabindex="-1"></a> <span class="sc">|</span> \<span class="sc">---</span><span class="ot">-&gt;</span> genus, a <span class="dv">4-8</span> letter acronym</span>
<span id="cb1-11"><a href="#cb1-11" tabindex="-1"></a> \<span class="sc">---</span><span class="ot">-&gt;</span> taxonomic kingdom<span class="sc">:</span> <span class="fu">A</span> (Archaea), <span class="fu">AN</span> (Animalia), <span class="fu">B</span> (Bacteria),</span>
<span id="cb1-12"><a href="#cb1-12" tabindex="-1"></a> <span class="fu">F</span> (Fungi), <span class="fu">PL</span> (Plantae), <span class="fu">P</span> (Protozoa)</span></code></pre><p></p></div>
<p>Values that cannot be coerced will be considered 'unknown' and will be returned as the MO code <code>UNKNOWN</code> with a warning.</p>
<span id="cb1-11"><a href="#cb1-11" tabindex="-1"></a> \<span class="sc">---</span><span class="ot">-&gt;</span> kingdom<span class="sc">:</span> <span class="fu">A</span> (Archaea), <span class="fu">AN</span> (Animalia), <span class="fu">B</span> (Bacteria),</span>
<span id="cb1-12"><a href="#cb1-12" tabindex="-1"></a> <span class="fu">C</span> (Chromista), <span class="fu">F</span> (Fungi), <span class="fu">PL</span> (Plantae),</span>
<span id="cb1-13"><a href="#cb1-13" tabindex="-1"></a> <span class="fu">P</span> (Protozoa)</span></code></pre><p></p></div>
<p>Values that cannot be coerced will be considered 'unknown' and will return the MO code <code>UNKNOWN</code> with a warning.</p>
<p>Use the <code><a href="mo_property.html">mo_*</a></code> functions to get properties based on the returned code, see <em>Examples</em>.</p>
<p>The <code>as.mo()</code> function uses a novel <a href="mo_matching_score.html">matching score algorithm</a> (see <em>Matching Score for Microorganisms</em> below) to match input against the <a href="microorganisms.html">available microbial taxonomy</a> in this package. This will lead to the effect that e.g. <code>"E. coli"</code> (a microorganism highly prevalent in humans) will return the microbial ID of <em>Escherichia coli</em> and not <em>Entamoeba coli</em> (a microorganism less prevalent in humans), although the latter would alphabetically come first.</p>
<p>With <code>Becker = TRUE</code>, the following 89 staphylococci will be converted to the <strong>coagulase-negative group</strong>: <em>S. americanisciuri</em>, <em>S. argensis</em>, <em>S. arlettae</em>, <em>S. auricularis</em>, <em>S. borealis</em>, <em>S. brunensis</em>, <em>S. caeli</em>, <em>S. caledonicus</em>, <em>S. canis</em>, <em>S. capitis</em>, <em>S. capitis capitis</em>, <em>S. capitis urealyticus</em>, <em>S. capitis ureolyticus</em>, <em>S. caprae</em>, <em>S. carnosus</em>, <em>S. carnosus carnosus</em>, <em>S. carnosus utilis</em>, <em>S. casei</em>, <em>S. caseolyticus</em>, <em>S. chromogenes</em>, <em>S. cohnii</em>, <em>S. cohnii cohnii</em>, <em>S. cohnii urealyticum</em>, <em>S. cohnii urealyticus</em>, <em>S. condimenti</em>, <em>S. croceilyticus</em>, <em>S. debuckii</em>, <em>S. devriesei</em>, <em>S. durrellii</em>, <em>S. edaphicus</em>, <em>S. epidermidis</em>, <em>S. equorum</em>, <em>S. equorum equorum</em>, <em>S. equorum linens</em>, <em>S. felis</em>, <em>S. fleurettii</em>, <em>S. gallinarum</em>, <em>S. haemolyticus</em>, <em>S. hominis</em>, <em>S. hominis hominis</em>, <em>S. hominis novobiosepticus</em>, <em>S. jettensis</em>, <em>S. kloosii</em>, <em>S. lentus</em>, <em>S. lloydii</em>, <em>S. lugdunensis</em>, <em>S. marylandisciuri</em>, <em>S. massiliensis</em>, <em>S. microti</em>, <em>S. muscae</em>, <em>S. nepalensis</em>, <em>S. pasteuri</em>, <em>S. petrasii</em>, <em>S. petrasii croceilyticus</em>, <em>S. petrasii jettensis</em>, <em>S. petrasii petrasii</em>, <em>S. petrasii pragensis</em>, <em>S. pettenkoferi</em>, <em>S. piscifermentans</em>, <em>S. pragensis</em>, <em>S. pseudoxylosus</em>, <em>S. pulvereri</em>, <em>S. ratti</em>, <em>S. rostri</em>, <em>S. saccharolyticus</em>, <em>S. saprophyticus</em>, <em>S. saprophyticus bovis</em>, <em>S. saprophyticus saprophyticus</em>, <em>S. schleiferi</em>, <em>S. schleiferi schleiferi</em>, <em>S. sciuri</em>, <em>S. sciuri carnaticus</em>, <em>S. sciuri lentus</em>, <em>S. sciuri rodentium</em>, <em>S. sciuri sciuri</em>, <em>S. shinii</em>, <em>S. simulans</em>, <em>S. stepanovicii</em>, <em>S. succinus</em>, <em>S. succinus casei</em>, <em>S. succinus succinus</em>, <em>S. taiwanensis</em>, <em>S. urealyticus</em>, <em>S. ureilyticus</em>, <em>S. veratri</em>, <em>S. vitulinus</em>, <em>S. vitulus</em>, <em>S. warneri</em>, and <em>S. xylosus</em>.<br> The following 16 staphylococci will be converted to the <strong>coagulase-positive group</strong>: <em>S. agnetis</em>, <em>S. argenteus</em>, <em>S. coagulans</em>, <em>S. cornubiensis</em>, <em>S. delphini</em>, <em>S. hyicus</em>, <em>S. hyicus chromogenes</em>, <em>S. hyicus hyicus</em>, <em>S. intermedius</em>, <em>S. lutrae</em>, <em>S. pseudintermedius</em>, <em>S. roterodami</em>, <em>S. schleiferi coagulans</em>, <em>S. schweitzeri</em>, <em>S. simiae</em>, and <em>S. singaporensis</em>.</p>
<p>With <code>Lancefield = TRUE</code>, the following streptococci will be converted to their corresponding Lancefield group: <em>S. agalactiae</em> (Group B), <em>S. anginosus anginosus</em> (Group F), <em>S. anginosus whileyi</em> (Group F), <em>S. anginosus</em> (Group F), <em>S. canis</em> (Group G), <em>S. dysgalactiae dysgalactiae</em> (Group C), <em>S. dysgalactiae equisimilis</em> (Group C), <em>S. dysgalactiae</em> (Group C), <em>S. equi equi</em> (Group C), <em>S. equi ruminatorum</em> (Group C), <em>S. equi zooepidemicus</em> (Group C), <em>S. equi</em> (Group C), <em>S. pyogenes</em> (Group A), <em>S. salivarius salivarius</em> (Group K), <em>S. salivarius thermophilus</em> (Group K), <em>S. salivarius</em> (Group K), and <em>S. sanguinis</em> (Group H).</p><div class="section">
<p>The <code>as.mo()</code> function uses a novel and scientifically validated (<a href="https://doi.org/10.18637/jss.v104.i03" class="external-link">doi:10.18637/jss.v104.i03</a>
) matching score algorithm (see <em>Matching Score for Microorganisms</em> below) to match input against the <a href="microorganisms.html">available microbial taxonomy</a> in this package. This implicates that e.g. <code>"E. coli"</code> (a microorganism highly prevalent in humans) will return the microbial ID of <em>Escherichia coli</em> and not <em>Entamoeba coli</em> (a microorganism less prevalent in humans), although the latter would alphabetically come first.</p><div class="section">
<h3 id="coping-with-uncertain-results">Coping with Uncertain Results<a class="anchor" aria-label="anchor" href="#coping-with-uncertain-results"></a></h3>
<p>Results of non-exact taxonomic input are based on their <a href="mo_matching_score.html">matching score</a>. The lowest allowed score can be set with the <code>minimum_matching_score</code> argument. At default this will be determined based on the character length of the input, and the <a href="microorganisms.html">taxonomic kingdom</a> and <a href="mo_matching_score.html">human pathogenicity</a> of the taxonomic outcome. If values are matched with uncertainty, a message will be shown to suggest the user to evaluate the results with <code>mo_uncertainties()</code>, which returns a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> with all specifications.</p>
<p>To increase the quality of matching, the <code>cleaning_regex</code> argument can be used to clean the input (i.e., <code>x</code>). This must be a <a href="https://rdrr.io/r/base/regex.html" class="external-link">regular expression</a> that matches parts of the input that should be removed before the input is matched against the <a href="microorganisms.html">available microbial taxonomy</a>. It will be matched Perl-compatible and case-insensitive. The default value of <code>cleaning_regex</code> is the outcome of the helper function <code>mo_cleaning_regex()</code>.</p>
<p>Results of non-exact taxonomic input are based on their <a href="mo_matching_score.html">matching score</a>. The lowest allowed score can be set with the <code>minimum_matching_score</code> argument. At default this will be determined based on the character length of the input, the <a href="microorganisms.html">taxonomic kingdom</a>, and the <a href="mo_matching_score.html">human pathogenicity</a> of the taxonomic outcome. If values are matched with uncertainty, a message will be shown to suggest the user to inspect the results with <code>mo_uncertainties()</code>, which returns a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> with all specifications.</p>
<p>To increase the quality of matching, the <code>cleaning_regex</code> argument is used to clean the input. This must be a <a href="https://rdrr.io/r/base/regex.html" class="external-link">regular expression</a> that matches parts of the input that should be removed before the input is matched against the <a href="microorganisms.html">available microbial taxonomy</a>. It will be matched Perl-compatible and case-insensitive. The default value of <code>cleaning_regex</code> is the outcome of the helper function <code>mo_cleaning_regex()</code>.</p>
<p>There are three helper functions that can be run after using the <code>as.mo()</code> function:</p><ul><li><p>Use <code>mo_uncertainties()</code> to get a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> that prints in a pretty format with all taxonomic names that were guessed. The output contains the matching score for all matches (see <em>Matching Score for Microorganisms</em> below).</p></li>
<li><p>Use <code>mo_failures()</code> to get a <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> <a href="https://rdrr.io/r/base/vector.html" class="external-link">vector</a> with all values that could not be coerced to a valid value.</p></li>
<li><p>Use <code>mo_renamed()</code> to get a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> with all values that could be coerced based on old, previously accepted taxonomic names.</p></li>
</ul></div>
<div class="section">
<h3 id="microbial-prevalence-of-pathogens-in-humans">Microbial Prevalence of Pathogens in Humans<a class="anchor" aria-label="anchor" href="#microbial-prevalence-of-pathogens-in-humans"></a></h3>
<h3 id="for-mycologists">For Mycologists<a class="anchor" aria-label="anchor" href="#for-mycologists"></a></h3>
<p>The coercion rules consider the prevalence of microorganisms in humans, which is available as the <code>prevalence</code> column in the <a href="microorganisms.html">microorganisms</a> data set. The grouping into human pathogenic prevalence is explained in the section <em>Matching Score for Microorganisms</em> below.</p>
<p>The <a href="mo_matching_score.html">matching score algorithm</a> gives precedence to bacteria over fungi. If you are only analysing fungi, be sure to use <code>only_fungi = TRUE</code>, or better yet, add this to your code and run it once every session:</p>
<p></p><div class="sourceCode r"><pre><code><span><span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">options</a></span><span class="op">(</span>AMR_only_fungi <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre><p></p></div>
<p>This will make sure that no bacteria or other 'non-fungi' will be returned by <code>as.mo()</code>, or any of the <code><a href="mo_property.html">mo_*</a></code> functions.</p>
</div>
<div class="section">
<h3 id="coagulase-negative-and-coagulase-positive-staphylococci">Coagulase-negative and Coagulase-positive Staphylococci<a class="anchor" aria-label="anchor" href="#coagulase-negative-and-coagulase-positive-staphylococci"></a></h3>
<p>With <code>Becker = TRUE</code>, the following staphylococci will be converted to their corresponding coagulase group:</p><ul><li><p>Coagulase-negative: <em>S. americanisciuri</em>, <em>S. argensis</em>, <em>S. arlettae</em>, <em>S. auricularis</em>, <em>S. borealis</em>, <em>S. brunensis</em>, <em>S. caeli</em>, <em>S. caledonicus</em>, <em>S. canis</em>, <em>S. capitis</em>, <em>S. capitis capitis</em>, <em>S. capitis urealyticus</em>, <em>S. capitis ureolyticus</em>, <em>S. caprae</em>, <em>S. carnosus</em>, <em>S. carnosus carnosus</em>, <em>S. carnosus utilis</em>, <em>S. casei</em>, <em>S. caseolyticus</em>, <em>S. chromogenes</em>, <em>S. cohnii</em>, <em>S. cohnii cohnii</em>, <em>S. cohnii urealyticum</em>, <em>S. cohnii urealyticus</em>, <em>S. condimenti</em>, <em>S. croceilyticus</em>, <em>S. debuckii</em>, <em>S. devriesei</em>, <em>S. durrellii</em>, <em>S. edaphicus</em>, <em>S. epidermidis</em>, <em>S. equorum</em>, <em>S. equorum equorum</em>, <em>S. equorum linens</em>, <em>S. felis</em>, <em>S. fleurettii</em>, <em>S. gallinarum</em>, <em>S. haemolyticus</em>, <em>S. hominis</em>, <em>S. hominis hominis</em>, <em>S. hominis novobiosepticus</em>, <em>S. jettensis</em>, <em>S. kloosii</em>, <em>S. lentus</em>, <em>S. lloydii</em>, <em>S. lugdunensis</em>, <em>S. marylandisciuri</em>, <em>S. massiliensis</em>, <em>S. microti</em>, <em>S. muscae</em>, <em>S. nepalensis</em>, <em>S. pasteuri</em>, <em>S. petrasii</em>, <em>S. petrasii croceilyticus</em>, <em>S. petrasii jettensis</em>, <em>S. petrasii petrasii</em>, <em>S. petrasii pragensis</em>, <em>S. pettenkoferi</em>, <em>S. piscifermentans</em>, <em>S. pragensis</em>, <em>S. pseudoxylosus</em>, <em>S. pulvereri</em>, <em>S. ratti</em>, <em>S. rostri</em>, <em>S. saccharolyticus</em>, <em>S. saprophyticus</em>, <em>S. saprophyticus bovis</em>, <em>S. saprophyticus saprophyticus</em>, <em>S. schleiferi</em>, <em>S. schleiferi schleiferi</em>, <em>S. sciuri</em>, <em>S. sciuri carnaticus</em>, <em>S. sciuri lentus</em>, <em>S. sciuri rodentium</em>, <em>S. sciuri sciuri</em>, <em>S. shinii</em>, <em>S. simulans</em>, <em>S. stepanovicii</em>, <em>S. succinus</em>, <em>S. succinus casei</em>, <em>S. succinus succinus</em>, <em>S. taiwanensis</em>, <em>S. urealyticus</em>, <em>S. ureilyticus</em>, <em>S. veratri</em>, <em>S. vitulinus</em>, <em>S. vitulus</em>, <em>S. warneri</em>, and <em>S. xylosus</em></p></li>
<li><p>Coagulase-positive: <em>S. agnetis</em>, <em>S. argenteus</em>, <em>S. coagulans</em>, <em>S. cornubiensis</em>, <em>S. delphini</em>, <em>S. hyicus</em>, <em>S. hyicus chromogenes</em>, <em>S. hyicus hyicus</em>, <em>S. intermedius</em>, <em>S. lutrae</em>, <em>S. pseudintermedius</em>, <em>S. roterodami</em>, <em>S. schleiferi coagulans</em>, <em>S. schweitzeri</em>, <em>S. simiae</em>, and <em>S. singaporensis</em></p></li>
</ul><p>This is based on:</p><ul><li><p>Becker K <em>et al.</em> (2014). <strong>Coagulase-Negative Staphylococci.</strong> <em>Clin Microbiol Rev.</em> 27(4): 870-926; <a href="https://doi.org/10.1128/CMR.00109-13" class="external-link">doi:10.1128/CMR.00109-13</a></p></li>
<li><p>Becker K <em>et al.</em> (2019). <strong>Implications of identifying the recently defined members of the <em>S. aureus</em> complex, <em>S. argenteus</em> and <em>S. schweitzeri</em>: A position paper of members of the ESCMID Study Group for staphylococci and Staphylococcal Diseases (ESGS).</strong> <em>Clin Microbiol Infect</em>; <a href="https://doi.org/10.1016/j.cmi.2019.02.028" class="external-link">doi:10.1016/j.cmi.2019.02.028</a></p></li>
<li><p>Becker K <em>et al.</em> (2020). <strong>Emergence of coagulase-negative staphylococci.</strong> <em>Expert Rev Anti Infect Ther.</em> 18(4):349-366; <a href="https://doi.org/10.1080/14787210.2020.1730813" class="external-link">doi:10.1080/14787210.2020.1730813</a></p></li>
</ul><p>For newly named staphylococcal species, such as <em>S. brunensis</em> (2024) and <em>S. shinii</em> (2023), we looked up the scientific reference to make sure the species are considered for the correct coagulase group.</p>
</div>
<div class="section">
<h3 id="lancefield-groups-in-streptococci">Lancefield Groups in Streptococci<a class="anchor" aria-label="anchor" href="#lancefield-groups-in-streptococci"></a></h3>
<p>With <code>Lancefield = TRUE</code>, the following streptococci will be converted to their corresponding Lancefield group:</p><ul><li><p>Streptococcus Group A: <em>S. pyogenes</em></p></li>
<li><p>Streptococcus Group B: <em>S. agalactiae</em></p></li>
<li><p>Streptococcus Group C: <em>S. dysgalactiae</em>, <em>S. dysgalactiae dysgalactiae</em>, <em>S. dysgalactiae equisimilis</em>, <em>S. equi</em>, <em>S. equi equi</em>, <em>S. equi ruminatorum</em>, and <em>S. equi zooepidemicus</em></p></li>
<li><p>Streptococcus Group F: <em>S. anginosus</em>, <em>S. anginosus anginosus</em>, <em>S. anginosus whileyi</em>, <em>S. constellatus</em>, <em>S. constellatus constellatus</em>, <em>S. constellatus pharyngis</em>, <em>S. constellatus viborgensis</em>, and <em>S. intermedius</em></p></li>
<li><p>Streptococcus Group G: <em>S. canis</em>, <em>S. dysgalactiae</em>, <em>S. dysgalactiae dysgalactiae</em>, and <em>S. dysgalactiae equisimilis</em></p></li>
<li><p>Streptococcus Group H: <em>S. sanguinis</em></p></li>
<li><p>Streptococcus Group K: <em>S. salivarius</em>, <em>S. salivarius salivarius</em>, and <em>S. salivarius thermophilus</em></p></li>
<li><p>Streptococcus Group L: <em>S. dysgalactiae</em>, <em>S. dysgalactiae dysgalactiae</em>, and <em>S. dysgalactiae equisimilis</em></p></li>
</ul><p>This is based on:</p><ul><li><p>Lancefield RC (1933). <strong>A serological differentiation of human and other groups of hemolytic streptococci.</strong> <em>J Exp Med.</em> 57(4): 571-95; <a href="https://doi.org/10.1084/jem.57.4.571" class="external-link">doi:10.1084/jem.57.4.571</a></p></li>
</ul></div>
</div>
<div class="section level2">
<h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2>
<ol><li><p>Berends MS <em>et al.</em> (2022). <strong>AMR: An R Package for Working with Antimicrobial Resistance Data</strong>. <em>Journal of Statistical Software</em>, 104(3), 1-31; <a href="https://doi.org/10.18637/jss.v104.i03" class="external-link">doi:10.18637/jss.v104.i03</a></p></li>
<li><p>Becker K <em>et al.</em> (2014). <strong>Coagulase-Negative Staphylococci.</strong> <em>Clin Microbiol Rev.</em> 27(4): 870-926; <a href="https://doi.org/10.1128/CMR.00109-13" class="external-link">doi:10.1128/CMR.00109-13</a></p></li>
<li><p>Becker K <em>et al.</em> (2019). <strong>Implications of identifying the recently defined members of the <em>S. aureus</em> complex, <em>S. argenteus</em> and <em>S. schweitzeri</em>: A position paper of members of the ESCMID Study Group for staphylococci and Staphylococcal Diseases (ESGS).</strong> <em>Clin Microbiol Infect</em>; <a href="https://doi.org/10.1016/j.cmi.2019.02.028" class="external-link">doi:10.1016/j.cmi.2019.02.028</a></p></li>
<li><p>Becker K <em>et al.</em> (2020). <strong>Emergence of coagulase-negative staphylococci.</strong> <em>Expert Rev Anti Infect Ther.</em> 18(4):349-366; <a href="https://doi.org/10.1080/14787210.2020.1730813" class="external-link">doi:10.1080/14787210.2020.1730813</a></p></li>
<li><p>Lancefield RC (1933). <strong>A serological differentiation of human and other groups of hemolytic streptococci.</strong> <em>J Exp Med.</em> 57(4): 571-95; <a href="https://doi.org/10.1084/jem.57.4.571" class="external-link">doi:10.1084/jem.57.4.571</a></p></li>
<li><p>Berends MS <em>et al.</em> (2022). <strong>Trends in Occurrence and Phenotypic Resistance of Coagulase-Negative Staphylococci (CoNS) Found in Human Blood in the Northern Netherlands between 2013 and 2019/</strong> <em>Micro.rganisms</em> 10(9), 1801; <a href="https://doi.org/10.3390/microorganisms10091801" class="external-link">doi:10.3390/microorganisms10091801</a></p></li>
<ul><li><p>Berends MS <em>et al.</em> (2022). <strong>AMR: An R Package for Working with Antimicrobial Resistance Data</strong>. <em>Journal of Statistical Software</em>, 104(3), 1-31; <a href="https://doi.org/10.18637/jss.v104.i03" class="external-link">doi:10.18637/jss.v104.i03</a></p></li>
<li><p>Parte, AC <em>et al.</em> (2020). <strong>List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ.</strong> International Journal of Systematic and Evolutionary Microbiology, 70, 5607-5612; <a href="https://doi.org/10.1099/ijsem.0.004332" class="external-link">doi:10.1099/ijsem.0.004332</a>
. Accessed from <a href="https://lpsn.dsmz.de" class="external-link">https://lpsn.dsmz.de</a> on June 24th, 2024.</p></li>
<li><p>Vincent, R <em>et al</em> (2013). <strong>MycoBank gearing up for new horizons.</strong> IMA Fungus, 4(2), 371-9; <a href="https://doi.org/10.5598/imafungus.2013.04.02.16" class="external-link">doi:10.5598/imafungus.2013.04.02.16</a>
. Accessed from <a href="https://www.mycobank.org" class="external-link">https://www.mycobank.org</a> on June 24th, 2024.</p></li>
<li><p>GBIF Secretariat (2023). GBIF Backbone Taxonomy. Checklist dataset <a href="https://doi.org/10.15468/39omei" class="external-link">doi:10.15468/39omei</a>
. Accessed from <a href="https://www.gbif.org" class="external-link">https://www.gbif.org</a> on June 24th, 2024.</p></li>
<li><p>Reimer, LC <em>et al.</em> (2022). <strong><em>BacDive</em> in 2022: the knowledge base for standardized bacterial and archaeal data.</strong> Nucleic Acids Res., 50(D1):D741-D74; <a href="https://doi.org/10.1093/nar/gkab961" class="external-link">doi:10.1093/nar/gkab961</a>
. Accessed from <a href="https://bacdive.dsmz.de" class="external-link">https://bacdive.dsmz.de</a> on July 16th, 2024.</p></li>
<li><p>Public Health Information Network Vocabulary Access and Distribution System (PHIN VADS). US Edition of SNOMED CT from 1 September 2020. Value Set Name 'Microorganism', OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href="https://phinvads.cdc.gov" class="external-link">https://phinvads.cdc.gov</a></p></li>
<li><p>Bartlett A <em>et al.</em> (2022). <strong>A comprehensive list of bacterial pathogens infecting humans</strong> <em>Microbiology</em> 168:001269; <a href="https://doi.org/10.1099/mic.0.001269" class="external-link">doi:10.1099/mic.0.001269</a></p></li>
</ol></div>
</ul></div>
<div class="section level2">
<h2 id="matching-score-for-microorganisms">Matching Score for Microorganisms<a class="anchor" aria-label="anchor" href="#matching-score-for-microorganisms"></a></h2>
@ -268,7 +299,7 @@
<span class="r-in"><span><span class="co"># input will get cleaned up with the input given in the `cleaning_regex` argument,</span></span></span>
<span class="r-in"><span><span class="co"># which defaults to `mo_cleaning_regex()`:</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/cat.html" class="external-link">cat</a></span><span class="op">(</span><span class="fu">mo_cleaning_regex</span><span class="op">(</span><span class="op">)</span>, <span class="st">"\n"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ([^A-Za-z- \(\)\[\]{}]+|([({]|\[).+([})]|\])|(^| )(e?spp([^a-z]+|$)|e?ssp([^a-z]+|$)|serogr.?up[a-z]*|e?ss([^a-z]+|$)|e?sp([^a-z]+|$)|var([^a-z]+|$)|serovar[a-z]*|sube?species|biovar[a-z]*|e?species|Ig[ADEGM]|e?subsp|biotype|titer|dummy)) </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ([^A-Za-z- \(\)\[\]{}]+|([({]|\[).+([})]|\])|(^| )( ?[a-z-]+[-](resistant|susceptible) ?|e?spp([^a-z]+|$)|e?ssp([^a-z]+|$)|serogr.?up[a-z]*|e?ss([^a-z]+|$)|e?sp([^a-z]+|$)|var([^a-z]+|$)|serovar[a-z]*|sube?species|biovar[a-z]*|e?species|Ig[ADEGM]|e?subsp|biotype|titer|dummy)) </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">as.mo</span><span class="op">(</span><span class="st">"Streptococcus group A"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mo'</span>

99
reference/as.sir.html
View File

@ -3,14 +3,14 @@
These breakpoints are currently implemented:
For clinical microbiology: EUCAST 2011-2024 and CLSI 2011-2024;
For veterinary microbiology: EUCAST 2021-2024 and CLSI 2019-2024;
ECOFFs (Epidemiological cut-off values): EUCAST 2020-2024 and CLSI 2022-2024.
For ECOFFs (Epidemiological Cut-off Values): EUCAST 2020-2024 and CLSI 2022-2024.
All breakpoints used for interpretation are available in our clinical_breakpoints data set."><meta property="og:description" content="Clean up existing SIR values, or interpret minimum inhibitory concentration (MIC) values and disk diffusion diameters according to EUCAST or CLSI. as.sir() transforms the input to a new class sir, which is an ordered factor containing the levels S, SDD, I, R, NI.
These breakpoints are currently implemented:
For clinical microbiology: EUCAST 2011-2024 and CLSI 2011-2024;
For veterinary microbiology: EUCAST 2021-2024 and CLSI 2019-2024;
ECOFFs (Epidemiological cut-off values): EUCAST 2020-2024 and CLSI 2022-2024.
For ECOFFs (Epidemiological Cut-off Values): EUCAST 2020-2024 and CLSI 2022-2024.
All breakpoints used for interpretation are available in our clinical_breakpoints data set."><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@msberends"><meta name="twitter:site" content="@msberends"></head><body>
@ -21,7 +21,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -71,7 +71,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<p>Clean up existing SIR values, or interpret minimum inhibitory concentration (MIC) values and disk diffusion diameters according to EUCAST or CLSI. <code>as.sir()</code> transforms the input to a new class <code>sir</code>, which is an ordered <a href="https://rdrr.io/r/base/factor.html" class="external-link">factor</a> containing the levels <code>S</code>, <code>SDD</code>, <code>I</code>, <code>R</code>, <code>NI</code>.</p>
<p>These breakpoints are currently implemented:</p><ul><li><p>For <strong>clinical microbiology</strong>: EUCAST 2011-2024 and CLSI 2011-2024;</p></li>
<li><p>For <strong>veterinary microbiology</strong>: EUCAST 2021-2024 and CLSI 2019-2024;</p></li>
<li><p>ECOFFs (Epidemiological cut-off values): EUCAST 2020-2024 and CLSI 2022-2024.</p></li>
<li><p>For <strong>ECOFFs</strong> (Epidemiological Cut-off Values): EUCAST 2020-2024 and CLSI 2022-2024.</p></li>
</ul><p>All breakpoints used for interpretation are available in our <a href="clinical_breakpoints.html">clinical_breakpoints</a> data set.</p>
</div>
@ -155,7 +155,8 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2>
<p>For interpretations of minimum inhibitory concentration (MIC) values and disk diffusion diameters:</p><ul><li><p><strong>CLSI M39: Analysis and Presentation of Cumulative Antimicrobial Susceptibility Test Data</strong>, 2011-2024, <em>Clinical and Laboratory Standards Institute</em> (CLSI). <a href="https://clsi.org/standards/products/microbiology/documents/m39/" class="external-link">https://clsi.org/standards/products/microbiology/documents/m39/</a>.</p></li>
<li><p><strong>CLSI M100: Performance Standard for Antimicrobial Susceptibility Testing</strong>, 2011-2024, <em>Clinical and Laboratory Standards Institute</em> (CLSI). <a href="https://clsi.org/standards/products/microbiology/documents/m100/" class="external-link">https://clsi.org/standards/products/microbiology/documents/m100/</a>.</p></li>
<li><p><strong>CLSI VET01: Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals</strong>, 2019-2024, <em>Clinical and Laboratory Standards Institute</em> (CLSI). <a href="https://clsi.org/standards/products/veterinary-medicine/documents/vet01//" class="external-link">https://clsi.org/standards/products/veterinary-medicine/documents/vet01//</a>.</p></li>
<li><p><strong>CLSI VET01: Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals</strong>, 2019-2024, <em>Clinical and Laboratory Standards Institute</em> (CLSI). <a href="https://clsi.org/standards/products/veterinary-medicine/documents/vet01/" class="external-link">https://clsi.org/standards/products/veterinary-medicine/documents/vet01/</a>.</p></li>
<li><p><strong>CLSI VET09: Understanding Susceptibility Test Data as a Component of Antimicrobial Stewardship in Veterinary Settings</strong>, 2019-2024, <em>Clinical and Laboratory Standards Institute</em> (CLSI). <a href="https://clsi.org/standards/products/veterinary-medicine/documents/vet09/" class="external-link">https://clsi.org/standards/products/veterinary-medicine/documents/vet09/</a>.</p></li>
<li><p><strong>EUCAST Breakpoint tables for interpretation of MICs and zone diameters</strong>, 2011-2024, <em>European Committee on Antimicrobial Susceptibility Testing</em> (EUCAST). <a href="https://www.eucast.org/clinical_breakpoints" class="external-link">https://www.eucast.org/clinical_breakpoints</a>.</p></li>
<li><p><strong>WHONET</strong> as a source for machine-reading the clinical breakpoints (<a href="https://msberends.github.io/AMR/reference/clinical_breakpoints.html#imported-from-whonet">read more here</a>), 1989-2024, <em>WHO Collaborating Centre for Surveillance of Antimicrobial Resistance</em>. <a href="https://whonet.org/" class="external-link">https://whonet.org/</a>.</p></li>
</ul></div>
@ -253,7 +254,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.mic</span>, <span class="va">as.sir</span>, ab <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cipro"</span>, <span class="st">"ampicillin"</span>, <span class="va">...</span><span class="op">)</span>, mo <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"E. coli"</span>, <span class="st">"K. pneumoniae"</span>, <span class="va">...</span><span class="op">)</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># for veterinary breakpoints, also set `host`:</span></span>
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.mic</span>, <span class="va">as.sir</span>, host <span class="op">=</span> <span class="st">"column_with_animal_hosts"</span>, guideline <span class="op">=</span> <span class="st">"CLSI"</span><span class="op">)</span></span></code></pre><p></p></div></li>
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.mic</span>, <span class="va">as.sir</span>, host <span class="op">=</span> <span class="st">"column_with_animal_species"</span>, guideline <span class="op">=</span> <span class="st">"CLSI"</span><span class="op">)</span></span></code></pre><p></p></div></li>
<li><p>Operators like "&lt;=" will be stripped before interpretation. When using <code>conserve_capped_values = TRUE</code>, an MIC value of e.g. "&gt;2" will always return "R", even if the breakpoint according to the chosen guideline is "&gt;=4". This is to prevent that capped values from raw laboratory data would not be treated conservatively. The default behaviour (<code>conserve_capped_values = FALSE</code>) considers "&gt;2" to be lower than "&gt;=4" and might in this case return "S" or "I".</p></li>
</ul></li>
<li><p>For <strong>interpreting disk diffusion diameters</strong> according to EUCAST or CLSI. You must clean your disk zones first using <code><a href="as.disk.html">as.disk()</a></code>, that also gives your columns the new data class <code><a href="as.disk.html">disk</a></code>. Also, be sure to have a column with microorganism names or codes. It will be found automatically, but can be set manually using the <code>mo</code> argument.</p><ul><li><p>Using <code>dplyr</code>, SIR interpretation can be done very easily with either:</p>
@ -263,7 +264,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.disk</span>, <span class="va">as.sir</span>, ab <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cipro"</span>, <span class="st">"ampicillin"</span>, <span class="va">...</span><span class="op">)</span>, mo <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"E. coli"</span>, <span class="st">"K. pneumoniae"</span>, <span class="va">...</span><span class="op">)</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># for veterinary breakpoints, also set `host`:</span></span>
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.disk</span>, <span class="va">as.sir</span>, host <span class="op">=</span> <span class="st">"column_with_animal_hosts"</span>, guideline <span class="op">=</span> <span class="st">"CLSI"</span><span class="op">)</span></span></code></pre><p></p></div></li>
<span><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.disk</span>, <span class="va">as.sir</span>, host <span class="op">=</span> <span class="st">"column_with_animal_species"</span>, guideline <span class="op">=</span> <span class="st">"CLSI"</span><span class="op">)</span></span></code></pre><p></p></div></li>
</ul></li>
<li><p>For <strong>interpreting a complete data set</strong>, with automatic determination of MIC values, disk diffusion diameters, microorganism names or codes, and antimicrobial test results. This is done very simply by running <code>as.sir(your_data)</code>.</p></li>
</ol><p><strong>For points 2, 3 and 4: Use <code>sir_interpretation_history()</code></strong> to retrieve a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> (or <a href="https://tibble.tidyverse.org/reference/tibble.html" class="external-link">tibble</a> if the <code>tibble</code> package is installed) with all results of the last <code>as.sir()</code> call.</p>
@ -284,6 +285,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<p>For veterinary guidelines, these might be the best options:</p>
<p></p><div class="sourceCode"><pre><code><span id="cb1-1"><a href="#cb1-1" tabindex="-1"></a> <span class="fu">options</span>(<span class="at">AMR_guideline =</span> <span class="st">"CLSI"</span>)</span>
<span id="cb1-2"><a href="#cb1-2" tabindex="-1"></a> <span class="fu">options</span>(<span class="at">AMR_breakpoint_type =</span> <span class="st">"animal"</span>)</span></code></pre><p></p></div>
<p>When applying veterinary breakpoints (by setting <code>host</code> or by setting <code>breakpoint_type = "animal"</code>), the <a href="https://clsi.org/standards/products/veterinary-medicine/documents/vet09/" class="external-link">CLSI VET09 guideline</a> will be applied to cope with missing animal species-specific breakpoints.</p>
</div>
<div class="section">
@ -291,6 +293,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
<p>After using <code>as.sir()</code>, you can use the <code><a href="eucast_rules.html">eucast_rules()</a></code> defined by EUCAST to (1) apply inferred susceptibility and resistance based on results of other antimicrobials and (2) apply intrinsic resistance based on taxonomic properties of a microorganism.</p>
<p>To determine which isolates are multi-drug resistant, be sure to run <code><a href="mdro.html">mdro()</a></code> (which applies the MDR/PDR/XDR guideline from 2012 at default) on a data set that contains S/I/R values. Read more about <a href="mdro.html">interpreting multidrug-resistant organisms here</a>.</p>
</div>
<div class="section">
@ -560,6 +563,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-in"><span> <span class="va">df_wide</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_at</a></span><span class="op">(</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/vars.html" class="external-link">vars</a></span><span class="op">(</span><span class="va">cipro</span><span class="op">:</span><span class="va">genta</span><span class="op">)</span>, <span class="va">as.sir</span>, mo <span class="op">=</span> <span class="st">"E. coli"</span>, uti <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX) based on column</span>
@ -569,6 +573,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'microorganism', EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> NOTE </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli - assuming body site 'Non-meningitis'.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX) based on column</span>
@ -584,6 +589,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'genta' (GEN, gentamicin) based on</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> column 'microorganism', EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX) based on column</span>
@ -593,6 +599,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'microorganism', EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> NOTE </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • Multiple breakpoints available for ciprofloxacin (CIP) in Escherichia coli - assuming body site 'Non-meningitis'.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX) based on column</span>
@ -605,6 +612,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'tobra' (TOB, tobramycin) based on</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> column 'microorganism', EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX) based on column</span>
@ -617,18 +625,21 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'tobra' (TOB, tobramycin) based on</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> column 'microorganism', EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX), 'cipro' (CIP, ciprofloxacin),</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'tobra' (TOB, tobramycin), and 'genta' (GEN, gentamicin) based on column</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'bacteria', CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX), 'cipro' (CIP, ciprofloxacin),</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'tobra' (TOB, tobramycin), and 'genta' (GEN, gentamicin) based on column</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'bacteria', CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'cipro' (CIP, ciprofloxacin), CLSI 2024...</span>
@ -637,6 +648,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'genta' (GEN, gentamicin), CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'cipro' (CIP, ciprofloxacin), CLSI 2024...</span>
@ -645,37 +657,36 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'genta' (GEN, gentamicin), CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Assuming breakpoint_type = "animal", since host is set.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Please note that in the absence of specific veterinary breakpoints for</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, breakpoints for dogs, cattle, swine, cats, horse,</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> aquatic, and poultry, in that order, are used as substitutes.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, the CLSI guideline VET09 will be applied where</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> possible.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX), 'cipro' (CIP, ciprofloxacin),</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'tobra' (TOB, tobramycin), and 'genta' (GEN, gentamicin) based on column</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'bacteria', CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> NOTE </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • Using dogs breakpoints since cattle for gentamicin (GEN) in Escherichia coli are not available.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Assuming breakpoint_type = "animal", since host is set.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Please note that in the absence of specific veterinary breakpoints for</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, breakpoints for dogs, cattle, swine, cats, horse,</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> aquatic, and poultry, in that order, are used as substitutes.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, the CLSI guideline VET09 will be applied where</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> possible.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'amoxicillin' (AMX), 'cipro' (CIP, ciprofloxacin),</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'tobra' (TOB, tobramycin), and 'genta' (GEN, gentamicin) based on column</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 'bacteria', CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> NOTE </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • Using dogs breakpoints since cattle for gentamicin (GEN) in Escherichia coli are not available.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Assuming breakpoint_type = "animal", since host is set.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ The following host(s) are invalid: "animalspecies". For missing animal</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> hosts, assuming "dogs", since these have the highest breakpoint</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> availability.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Please note that in the absence of specific veterinary breakpoints for</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, breakpoints for dogs, cattle, swine, cats, horse,</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> aquatic, and poultry, in that order, are used as substitutes.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, the CLSI guideline VET09 will be applied where</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> possible.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'antibiotic' (TESTAB, test Antibiotic), CLSI</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> WARNING </span>
@ -688,22 +699,29 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> WARNING </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • No CLSI 2024 DISK breakpoints available for test Antibiotic (TESTAB).</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>There was 1 warning in `mutate()`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> In argument: `cipro = (function (x, ...) ...`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> Caused by warning:</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #BBBB00;">!</span> The following animal host(s) could not be coerced: "animal_species"</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Assuming breakpoint_type = "animal", since host is set.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ The following host(s) are invalid: "animalspecies". For missing animal</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> hosts, assuming "dogs", since these have the highest breakpoint</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> availability.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Please note that in the absence of specific veterinary breakpoints for</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, breakpoints for dogs, cattle, swine, cats, horse,</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> aquatic, and poultry, in that order, are used as substitutes.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> certain animal hosts, the CLSI guideline VET09 will be applied where</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> possible.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'cipro' (CIP, ciprofloxacin), CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> WARNING </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • No CLSI 2024 MIC breakpoints available for ciprofloxacin (CIP).</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'tobra' (TOB, tobramycin), CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'genta' (GEN, gentamicin), CLSI 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> OK </span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>There was 1 warning in `mutate()`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> In argument: `across(...)`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> Caused by warning:</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #BBBB00;">!</span> The following animal host(s) could not be coerced: "animal_species"</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: column 'nitrofuratoin' (NIT, nitrofurantoin),</span>
@ -713,12 +731,14 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Assuming value "urine" in column 'specimen' reflects a urinary tract</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> infection.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Use as.sir(uti = FALSE) to prevent this.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: column 'nitrofuratoin' (NIT, nitrofurantoin),</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> EUCAST 2024...</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> NOTE </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> • Breakpoints for nitrofurantoin (NIT) in Escherichia coli are only available for (uncomplicated) urinary tract infections (UTI); assuming uti = TRUE.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'cipro' (CIP, ciprofloxacin), EUCAST 2024...</span>
@ -736,6 +756,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-in"><span><span class="co">## Using base R ------------------------------------------------</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">as.sir</span><span class="op">(</span><span class="va">df_wide</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: column 'amoxicillin' (AMX), EUCAST 2024...</span>
@ -760,16 +781,16 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 59 × 16</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> datetime index ab_given mo_given host_given ab mo </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">*</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;ab&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 2024-07-16 <span style="color: #949494;">14:14:03</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2024-07-16 <span style="color: #949494;">14:14:04</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 2024-07-16 <span style="color: #949494;">14:14:04</span> 4 genta Escheri… cattle GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-07-16 <span style="color: #949494;">14:14:05</span> 4 genta Escheri… cattle GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 2024-07-16 <span style="color: #949494;">14:14:03</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 2024-07-16 <span style="color: #949494;">14:14:04</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 2024-07-16 <span style="color: #949494;">14:14:04</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-07-16 <span style="color: #949494;">14:14:05</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-07-16 <span style="color: #949494;">14:14:03</span> 2 cipro Escheri… human CIP B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-07-16 <span style="color: #949494;">14:14:04</span> 2 cipro Escheri… human CIP B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 2024-09-19 <span style="color: #949494;">12:03:01</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 2024-09-19 <span style="color: #949494;">12:03:01</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 2 cipro Escheri… human CIP B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-09-19 <span style="color: #949494;">12:03:00</span> 2 cipro Escheri… dogs CIP B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-09-19 <span style="color: #949494;">12:03:01</span> 2 cipro Escheri… dogs CIP B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-09-19 <span style="color: #949494;">12:03:02</span> 2 nitrofu… E. coli human NIT B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 49 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 9 more variables: host &lt;chr&gt;, method &lt;chr&gt;, input &lt;dbl&gt;, outcome &lt;sir&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># notes &lt;chr&gt;, guideline &lt;chr&gt;, ref_table &lt;chr&gt;, uti &lt;lgl&gt;,</span></span>
@ -782,6 +803,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-in"><span> ab <span class="op">=</span> <span class="st">"AMP"</span>,</span></span>
<span class="r-in"><span> guideline <span class="op">=</span> <span class="st">"EUCAST"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting MIC values: 'AMP' (ampicillin), EUCAST 2024...</span>
@ -796,6 +818,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-in"><span> ab <span class="op">=</span> <span class="st">"ampicillin"</span>, <span class="co"># and `ab` with as.ab()</span></span></span>
<span class="r-in"><span> guideline <span class="op">=</span> <span class="st">"EUCAST"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> ℹ Run sir_interpretation_history() afterwards to retrieve a logbook with</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> all the details of the breakpoint interpretations.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Interpreting disk diffusion zones: 'ampicillin' (AMP), EUCAST 2024...</span>
@ -807,7 +830,7 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-in"><span><span class="co"># For CLEANING existing SIR values ------------------------------------</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">as.sir</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"S"</span>, <span class="st">"SDD"</span>, <span class="st">"I"</span>, <span class="st">"R"</span>, <span class="st">"NI"</span>, <span class="st">"A"</span>, <span class="st">"B"</span>, <span class="st">"C"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>in as.sir(): 3 results in column '30' truncated (38%) that were invalid</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>in as.sir(): 3 results in column '19' truncated (38%) that were invalid</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> antimicrobial interpretations: "A", "B", and "C"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'sir'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S SDD I R NI &lt;NA&gt; &lt;NA&gt; &lt;NA&gt;</span>

2
reference/atc_online.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/av_from_text.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/av_property.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/availability.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/bug_drug_combinations.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/clinical_breakpoints.html
View File

@ -13,7 +13,7 @@ Use as.sir() to transform MICs or disks measurements to SIR values."><meta prope
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/count.html
View File

@ -9,7 +9,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/custom_eucast_rules.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/dosage.html
View File

@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/eucast_rules.html
View File

@ -9,7 +9,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9073</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

Some files were not shown because too many files have changed in this diff Show More