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v1.5.0

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dr. M.S. (Matthijs) Berends
2021-01-06 11:16:17 +01:00
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NEWS.md
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# AMR 1.4.0.9062
## <small>Last updated: 4 January 2021</small>
# AMR 1.5.0
*Note: the rules of 'EUCAST Clinical Breakpoints v11.0 (2021)' will be added in the next release, to be expected in February/March 2021.*
### New
* Functions `get_episode()` and `is_new_episode()` to determine (patient) episodes which are not necessarily based on microorganisms. The `get_episode()` function returns the index number of the episode per group, while the `is_new_episode()` function returns values `TRUE`/`FALSE` to indicate whether an item in a vector is the start of a new episode. They also support `dplyr`s grouping (i.e. using `group_by()`):
```r
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select(mo, cephalosporins(), aminoglycosides()) %>%
as_tibble()
```
* For antibiotic selection functions (such as `cephalosporins()`, `aminoglycosides()`) to select columns based on a certain antibiotic group, the dependency on the `tidyselect` package was removed, meaning that they can now also be used without the need to have this package installed and now also work in base R function calls:
* For antibiotic selection functions (such as `cephalosporins()`, `aminoglycosides()`) to select columns based on a certain antibiotic group, the dependency on the `tidyselect` package was removed, meaning that they can now also be used without the need to have this package installed and now also work in base R function calls (they rely on R 3.2 or later):
```r
# above example in base R:
example_isolates[which(first_isolate() & mo_is_gram_negative()),