mirror of
https://github.com/msberends/AMR.git
synced 2026-05-31 19:41:51 +02:00
Built site for AMR@3.0.1.9052: 3f1b20c
This commit is contained in:
@@ -1,6 +1,6 @@
|
||||
# Changelog
|
||||
|
||||
## AMR 3.0.1.9050
|
||||
## AMR 3.0.1.9052
|
||||
|
||||
#### New
|
||||
|
||||
@@ -63,27 +63,9 @@
|
||||
|
||||
#### Fixes
|
||||
|
||||
- [`as.sir()`](https://amr-for-r.org/reference/as.sir.md) with
|
||||
`reference_data`: custom guideline names now correctly classify values
|
||||
as R using EUCAST convention (`> breakpoint_R` for MIC,
|
||||
`< breakpoint_R` for disk); custom breakpoints with `host = NA` now
|
||||
serve as a host-agnostic fallback when no host-specific row matches
|
||||
(fixes [\#239](https://github.com/msberends/AMR/issues/239))
|
||||
- Fixed multiple bugs in the `parallel = TRUE` mode of
|
||||
[`as.sir()`](https://amr-for-r.org/reference/as.sir.md) for data
|
||||
frames: (1) PSOCK workers (Windows / R \< 4.0) now correctly load the
|
||||
AMR package before processing, with a graceful fallback to sequential
|
||||
mode when the package cannot be loaded; (2) resolved stale-environment
|
||||
issue where the PSOCK path read a frozen copy of `AMR_env` instead of
|
||||
the live one, causing the wrong log entries to be captured; (3) fixed
|
||||
log-entry duplication in the fork-based path (`mclapply`) where
|
||||
pre-existing `sir_interpretation_history` rows were included in every
|
||||
worker’s captured log; (4) removed use of non-exported internal
|
||||
functions (`%pm>%`, `pm_pull`, `as.sir.default`) from the worker
|
||||
closure, which made PSOCK workers fail; (5) suppressed per-column
|
||||
progress messages inside workers to prevent interleaved console
|
||||
output; (6) fixed a malformed Unicode escape `\u00a` (3 digits) in the
|
||||
“DONE” status message
|
||||
frames
|
||||
- Fixed a bug in [`as.sir()`](https://amr-for-r.org/reference/as.sir.md)
|
||||
where values that were purely numeric (e.g., `"1"`) and matched the
|
||||
broad SIR-matching regex would be incorrectly stripped of all content
|
||||
@@ -145,6 +127,12 @@
|
||||
|
||||
#### Updates
|
||||
|
||||
- [`as.sir()`](https://amr-for-r.org/reference/as.sir.md) with
|
||||
`reference_data`: custom guideline names now correctly classify values
|
||||
as R using EUCAST convention (`> breakpoint_R` for MIC,
|
||||
`< breakpoint_R` for disk); custom breakpoints with `host = NA` now
|
||||
serve as a host-agnostic fallback when no host-specific row matches
|
||||
([\#239](https://github.com/msberends/AMR/issues/239))
|
||||
- Extensive `cli` integration for better message handling and clickable
|
||||
links in messages and warnings
|
||||
([\#191](https://github.com/msberends/AMR/issues/191),
|
||||
|
||||
Reference in New Issue
Block a user