fixes

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 1.8.2.9067
+Version: 1.8.2.9068
 Date: 2022-12-20
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)

NEWS.md

@@ -1,4 +1,4 @@
-# AMR 1.8.2.9067
+# AMR 1.8.2.9068
 
 *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)*
 

inst/tinytest/test-first_isolate.R

@@ -67,8 +67,8 @@ expect_equal(
 
 
 # first non-ICU isolates
-expect_equal(
-  sum(
+expect_identical(
+  as.integer(sum(
     first_isolate(example_isolates,
       col_mo = "mo",
       col_date = "date",
@@ -78,8 +78,8 @@ expect_equal(
       icu_exclude = TRUE
     ),
     na.rm = TRUE
-  ),
-  942
+  )),
+  942L
 )
 
 # set 1500 random observations to be of specimen type 'Urine'

inst/tinytest/test-mo.R

@@ -114,7 +114,7 @@ expect_identical(
       "Paraburkholderia nodosa"
     ))
   ),
-  rep("B_PRBRK_NODS", 4)
+  rep("B_PRBRK_NODS", 2)
 )
 
 # empty values
@@ -198,9 +198,6 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0")) {
   expect_true(example_isolates %>% pull(mo) %>% is.mo())
 }
 
-# unknown results
-expect_warning(as.mo("INVALID"))
-
 # print
 expect_stdout(print(as.mo(c("B_ESCHR_COLI", NA))))