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speed improvement eucast_rules(), support more old MO codes

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dr. M.S. (Matthijs) Berends committed 2019-05-20 12:00:18 +02:00
1 parent b0033dae1b
commit 4ca00e1868
35 files changed
+590 -683
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vignettes/AMR.Rmd
+2 -1
View File
@@ -16,8 +16,9 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
warning = FALSE,
collapse = TRUE,
comment = "#>",
comment = "#",
fig.width = 7.5,
fig.height = 5
)
vignettes/EUCAST.Rmd
+1 -1
View File
@@ -17,7 +17,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
comment = "#",
fig.width = 7.5,
fig.height = 4.5
)
vignettes/SPSS.Rmd
+1 -1
View File
@@ -16,7 +16,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
comment = "#"
)
# set to original language (English)
Sys.setlocale(locale = "C")
vignettes/ab_property.Rmd
+1 -1
View File
@@ -16,7 +16,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
comment = "#"
)
# set to original language (English)
Sys.setlocale(locale = "C")
vignettes/benchmarks.Rmd
+1 -1
View File
@@ -17,7 +17,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
comment = "#",
fig.width = 7.5,
fig.height = 4.5
)
vignettes/mo_property.Rmd
+1 -1
View File
@@ -16,7 +16,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
comment = "#"
)
# set to original language (English)
Sys.setlocale(locale = "C")
vignettes/resistance_predict.Rmd
+1 -1
View File
@@ -16,7 +16,7 @@ editor_options:
```{r setup, include = FALSE, results = 'markup'}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
comment = "#",
fig.width = 7.5,
fig.height = 4.75
)