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(v3.0.0.9027) skimr update and as.ab warning - fixes #234, fixes #232

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-09-10 13:32:52 +02:00
parent d5a568318b
commit 4d7c4ca52c
13 changed files with 92 additions and 58 deletions
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19
tests/testthat/test-sir.R
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@@ -103,22 +103,13 @@ test_that("test-sir.R", {
pull(MEM) %>%
is.sir())
}
# skimr
if (AMR:::pkg_is_available("skimr", min_version = "2.0.0", also_load = TRUE)) {
expect_inherits(
skim(example_isolates),
"data.frame"
expect_named(
skim(example_isolates$PEN),
c("skim_type", "skim_variable", "n_missing", "complete_rate", "sir.count_S", "sir.count_I", "sir.count_R", "sir.prop_S", "sir.prop_I", "sir.prop_R", "sir.hist")
)
if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
expect_inherits(
example_isolates %>%
mutate(
m = as.mic(2),
d = as.disk(20)
) %>%
skim(),
"data.frame"
)
}
}
expect_equal(as.sir(c("", "-", NA, "NULL")), c(NA_sir_, NA_sir_, NA_sir_, NA_sir_))