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(v3.0.0.9026) fix tidymodels doc

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dr. M.S. (Matthijs) Berends
2025-09-04 15:03:28 +02:00
parent c1c49fa463
commit d5a568318b
3 changed files with 12 additions and 2 deletions
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DESCRIPTION
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Package: AMR
Version: 3.0.0.9025
Version: 3.0.0.9026
Date: 2025-09-04
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

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NEWS.md
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# AMR 3.0.0.9025
# AMR 3.0.0.9026
This is a bugfix release following the release of v3.0.0 in June 2025.

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vignettes/AMR_with_tidymodels.Rmd
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@@ -221,6 +221,12 @@ In this second example, we demonstrate how to use `<mic>` columns directly in `t
This approach and idea formed the basis for the publication [DOI: 10.3389/fmicb.2025.1582703](https://doi.org/10.3389/fmicb.2025.1582703) to model the presence of extended-spectrum beta-lactamases (ESBL).
> NOTE: THIS EXAMPLE WILL BE AVAILABLE IN A NEXT VERSION (#TODO)
>
> The new AMR package version will contain new tidymodels selectors such as `step_mic_log2()`.
<!--
### **Objective**
Our goal is to:
@@ -347,12 +353,16 @@ ggplot(predictions, aes(x = esbl, fill = .pred_class)) +
theme_minimal()
```
<!--
### **Conclusion**
In this example, we showcased how the new `AMR`-specific recipe steps simplify working with `<mic>` columns in `tidymodels`. The `step_mic_log2()` transformation converts ordered MICs to log2-transformed numerics, improving compatibility with classification models.
This pipeline enables realistic, reproducible, and interpretable modelling of antimicrobial resistance data.
-->
---