P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 17:07:54 +02:00
Code Releases Activity

Built site for AMR: 2.0.0.9004@549790c

Browse Source
This commit is contained in:
github-actions
2023-03-20 21:10:09 +00:00
parent bd4f12016d
commit 4f0b1843a3
91 changed files with 364 additions and 361 deletions
Download Patch File Download Diff File Expand all files Collapse all files

50
articles/MDR.html
View File

@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9003</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9004</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R R R I R I</span></span>
<span><span class="co">#&gt; 2 I R S I I R</span></span>
<span><span class="co">#&gt; 3 I R I I I R</span></span>
<span><span class="co">#&gt; 4 R I I S S I</span></span>
<span><span class="co">#&gt; 5 I R R R I S</span></span>
<span><span class="co">#&gt; 6 S S S R I R</span></span>
<span><span class="co">#&gt; 1 I R I I S R</span></span>
<span><span class="co">#&gt; 2 I R R S S I</span></span>
<span><span class="co">#&gt; 3 I R S R R R</span></span>
<span><span class="co">#&gt; 4 R R I R I R</span></span>
<span><span class="co">#&gt; 5 R R R R R S</span></span>
<span><span class="co">#&gt; 6 S R S S R S</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,32 +438,32 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3239</td>
<td align="right">64.78%</td>
<td align="right">3239</td>
<td align="right">64.78%</td>
<td align="right">3251</td>
<td align="right">65.02%</td>
<td align="right">3251</td>
<td align="right">65.02%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1004</td>
<td align="right">20.08%</td>
<td align="right">4243</td>
<td align="right">84.86%</td>
<td align="right">971</td>
<td align="right">19.42%</td>
<td align="right">4222</td>
<td align="right">84.44%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">423</td>
<td align="right">8.46%</td>
<td align="right">4666</td>
<td align="right">93.32%</td>
<td align="right">468</td>
<td align="right">9.36%</td>
<td align="right">4690</td>
<td align="right">93.80%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">250</td>
<td align="right">5.00%</td>
<td align="right">226</td>
<td align="right">4.52%</td>
<td align="right">4916</td>
<td align="right">98.32%</td>
</tr>