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Built site for AMR: 2.0.0.9004@549790c

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2023-03-20 21:10:09 +00:00
parent bd4f12016d
commit 4f0b1843a3
91 changed files with 364 additions and 361 deletions
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reference/antibiogram.html
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@@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9003</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9004</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -506,13 +506,16 @@
<span class="r-in"><span><span class="co"># in an Rmd file, you would just need to return `ureido` in a chunk,</span></span></span>
<span class="r-in"><span><span class="co"># but to be explicit here:</span></span></span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/ns-load.html" class="external-link">requireNamespace</a></span><span class="op">(</span><span class="st">"knitr"</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span> <span class="fu">knitr</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/knitr/man/knit_print.html" class="external-link">knit_print</a></span><span class="op">(</span><span class="va">ureido</span><span class="op">)</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/cat.html" class="external-link">cat</a></span><span class="op">(</span><span class="fu">knitr</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/knitr/man/knit_print.html" class="external-link">knit_print</a></span><span class="op">(</span><span class="va">ureido</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "\n\n|Pathogen (N) | Piperacillin/tazobactam|\n|:---------------------|-----------------------:|\n|CoNS (33) | 30|\n|*E. coli* (416) | 94|\n|*K. pneumoniae* (53) | 89|\n|*S. pneumoniae* (112) | 100|"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> attr(,"class")</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "knit_asis"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> attr(,"knit_cacheable")</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |Pathogen (N) | Piperacillin/tazobactam|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |:---------------------|-----------------------:|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |CoNS (33) | 30|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |*E. coli* (416) | 94|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |*K. pneumoniae* (53) | 89|</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> |*S. pneumoniae* (112) | 100|</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># Generate plots with ggplot2 or base R --------------------------------</span></span></span>