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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9003</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9004</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.125 0.0625 32 0.025 64 0.01 64 4 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 128 0.5 0.25 32 0.025 0.01 0.025 0.001 0.01 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.01 >=256 64 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 <=0.001 <=0.001 8 32 <=0.001 128 0.01 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 256 <=0.001 0.5 1 4 256 0.25 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 0.01 1 0.5 0.0625 2 0.005 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 32 21 18 42 16 48 9 47 35 7 21 41 23 39 12 45 27 33 31 41 25 42 47 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 35 30 50 38 41 6 45 36 25 28 45 43 9 15 22 46 12 45 22 37 25 12 50 43</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I S I S S I S R R R I S R I I I R I I I R R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R S S R R R R R S S S R S I R S I S S R S I I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.125 0.002 0.25 0.25 16 1 0.002 128 1 0.025 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 0.002 0.001 64 4 0.001 0.025 0.001 0.005 0.005 0.01 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 64 0.025 >=128 0.25 1 16 8 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.0625 0.25 2 0.01 8 32 >=128 1 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 0.025 0.002 0.01 0.0625</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 1 2 1 1 1 16 4 0.5 16 2 8 16 1 8 0.5 2 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 8 8 16 0.5 4 0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 16 2 32 4 8 4 0.5 0.5 4 1 0.5 0.5 16 4 16 2 1 0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 2 0.5 0.5 1 1 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 <=0.025 0.0625 <=0.025 1 <=0.025 2 <=0.025 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 0.125 0.0625 1 2 1 8 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 8 8 0.25 8 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.5 16 1 2 1 1 4 0.0625 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 0.0625 0.25 4 0.5 16 0.25 0.5 0.125 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 1 0.5 0.125 0.025 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 11 19 9 48 20 22 49 10 27 10 35 8 27 31 26 28 13 34 32 12 37 46 41 26</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 34 48 26 44 41 18 40 49 46 32 49 30 14 40 18 9 42 17 47 42 18 43 20 33 48</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 14 14 17 15 16 17 14 12 17 13 11 13 15 17 16 17 11 11 17 14 13 12 17 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 17 13 14 15 14 11 14 12 16 17 17 15 11 16 13 15 11 14 15 13 17 14 17 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 22 21 20 17 21 21 25 16 22 23 25 15 25 19 18 23 18 24 21 22 24 17 18 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 24 15 17 22 20 26 19 18 22 24 20 16 16 27 16 19 27 25 18 16 26 17 26 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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