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mirror of https://github.com/msberends/AMR.git synced 2024-12-24 18:46:14 +01:00

website update

This commit is contained in:
dr. M.S. (Matthijs) Berends 2022-08-25 19:11:02 +02:00
parent bdbc112f99
commit 53c4b37252

View File

@ -32,7 +32,7 @@ template:
assets: "pkgdown/logos" # use logos in this folder
bslib:
code_font: {google: "Fira Code"}
body-text-align: "justify"
# body-text-align: "justify"
line-height-base: 1.75
# the green "success" colour of this bootstrap theme should be the same as the green in our logo
success: "#128f76"
@ -47,9 +47,9 @@ template:
news:
one_page: true
cran_dates: true
footer:
structure:
structure:
left: [devtext]
right: [logo]
components:
@ -99,9 +99,9 @@ navbar:
- text: "Get properties of an antibiotic"
icon: "fa-capsules"
href: "reference/ab_property.html" # reference instead of an article
- text: "Other: benchmarks"
icon: "fa-shipping-fast"
href: "articles/benchmarks.html"
# - text: "Other: benchmarks"
# icon: "fa-shipping-fast"
# href: "articles/benchmarks.html"
- text: "Manual"
icon: "fa-book-open"
href: "reference/index.html"
@ -128,7 +128,7 @@ reference:
- "`as.mo`"
- "`mo_property`"
- "`mo_source`"
- title: "Preparing data: antibiotics"
desc: >
Use these functions to get valid properties of antibiotics from any input or to clean your input.
@ -138,7 +138,7 @@ reference:
- "`ab_property`"
- "`ab_from_text`"
- "`atc_online_property`"
- title: "Preparing data: antimicrobial resistance"
desc: >
With `as.mic()` and `as.disk()` you can transform your raw input to valid MIC or disk diffusion values.
@ -150,7 +150,7 @@ reference:
- "`as.disk`"
- "`eucast_rules`"
- "`custom_eucast_rules`"
- title: "Analysing data: antimicrobial resistance"
desc: >
Use these function for the analysis part. You can use `susceptibility()` or `resistance()` on any antibiotic column.
@ -190,7 +190,7 @@ reference:
- "`example_isolates_unclean`"
- "`rsi_translation`"
- "`WHONET`"
- title: "Other: miscellaneous functions"
desc: >
These functions are mostly for internal use, but some of
@ -208,7 +208,7 @@ reference:
- "`mo_matching_score`"
- "`pca`"
- "`random`"
- title: "Other: statistical tests"
desc: >
Some statistical tests or methods are not part of base R and were added to this package for convenience.
@ -224,4 +224,3 @@ reference:
in a future version.
contents:
- "`AMR-deprecated`"