P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2024-12-25 06:46:11 +01:00
Code Releases Activity

website update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends 2022-08-25 19:11:02 +02:00
parent bdbc112f99
commit 53c4b37252
1 changed files with 11 additions and 12 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

23
_pkgdown.yml
View File

@ -32,7 +32,7 @@ template:
assets: "pkgdown/logos" # use logos in this folder assets: "pkgdown/logos" # use logos in this folder
bslib: bslib:
code_font: {google: "Fira Code"} code_font: {google: "Fira Code"}
body-text-align: "justify" # body-text-align: "justify"
line-height-base: 1.75 line-height-base: 1.75
# the green "success" colour of this bootstrap theme should be the same as the green in our logo # the green "success" colour of this bootstrap theme should be the same as the green in our logo
success: "#128f76" success: "#128f76"
@ -47,9 +47,9 @@ template:
news: news:
one_page: true one_page: true
cran_dates: true cran_dates: true
footer: footer:
structure: structure:
left: [devtext] left: [devtext]
right: [logo] right: [logo]
components: components:
@ -99,9 +99,9 @@ navbar:
- text: "Get properties of an antibiotic" - text: "Get properties of an antibiotic"
icon: "fa-capsules" icon: "fa-capsules"
href: "reference/ab_property.html" # reference instead of an article href: "reference/ab_property.html" # reference instead of an article
- text: "Other: benchmarks" # - text: "Other: benchmarks"
icon: "fa-shipping-fast" # icon: "fa-shipping-fast"
href: "articles/benchmarks.html" # href: "articles/benchmarks.html"
- text: "Manual" - text: "Manual"
icon: "fa-book-open" icon: "fa-book-open"
href: "reference/index.html" href: "reference/index.html"
@ -128,7 +128,7 @@ reference:
- "`as.mo`" - "`as.mo`"
- "`mo_property`" - "`mo_property`"
- "`mo_source`" - "`mo_source`"
- title: "Preparing data: antibiotics" - title: "Preparing data: antibiotics"
desc: > desc: >
Use these functions to get valid properties of antibiotics from any input or to clean your input. Use these functions to get valid properties of antibiotics from any input or to clean your input.
@ -138,7 +138,7 @@ reference:
- "`ab_property`" - "`ab_property`"
- "`ab_from_text`" - "`ab_from_text`"
- "`atc_online_property`" - "`atc_online_property`"
- title: "Preparing data: antimicrobial resistance" - title: "Preparing data: antimicrobial resistance"
desc: > desc: >
With `as.mic()` and `as.disk()` you can transform your raw input to valid MIC or disk diffusion values. With `as.mic()` and `as.disk()` you can transform your raw input to valid MIC or disk diffusion values.
@ -150,7 +150,7 @@ reference:
- "`as.disk`" - "`as.disk`"
- "`eucast_rules`" - "`eucast_rules`"
- "`custom_eucast_rules`" - "`custom_eucast_rules`"
- title: "Analysing data: antimicrobial resistance" - title: "Analysing data: antimicrobial resistance"
desc: > desc: >
Use these function for the analysis part. You can use `susceptibility()` or `resistance()` on any antibiotic column. Use these function for the analysis part. You can use `susceptibility()` or `resistance()` on any antibiotic column.
@ -190,7 +190,7 @@ reference:
- "`example_isolates_unclean`" - "`example_isolates_unclean`"
- "`rsi_translation`" - "`rsi_translation`"
- "`WHONET`" - "`WHONET`"
- title: "Other: miscellaneous functions" - title: "Other: miscellaneous functions"
desc: > desc: >
These functions are mostly for internal use, but some of These functions are mostly for internal use, but some of
@ -208,7 +208,7 @@ reference:
- "`mo_matching_score`" - "`mo_matching_score`"
- "`pca`" - "`pca`"
- "`random`" - "`random`"
- title: "Other: statistical tests" - title: "Other: statistical tests"
desc: > desc: >
Some statistical tests or methods are not part of base R and were added to this package for convenience. Some statistical tests or methods are not part of base R and were added to this package for convenience.
@ -224,4 +224,3 @@ reference:
in a future version. in a future version.
contents: contents:
- "`AMR-deprecated`" - "`AMR-deprecated`"