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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9131</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9132</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,43 +193,41 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.01 0.005 0.5 0.025 >=256 0.0625 >=256 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 64 <=0.002 0.025 0.125 128 0.01 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 128 128 0.005 32 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 2 4 0.01 <=0.001 0.01 8 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 16 64 0.01 0.005 0.25 0.125 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 1 8 0.005 0.01 <=0.001 0.01 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 15 43 41 37 41 46 47 49 9 30 39 8 36 8 19 24 14 25 48 39 7 12 8 49</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 40 41 23 18 8 43 47 14 7 13 50 15 45 42 46 44 47 47 44 42 11 22 49 42</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S I R R R R R S R S S I R S S R S I S R S S R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R I S R I I S I S I S I I R I S S R S S I R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 8 1 0.01 0.025 8 64 0.5 0.01 0.002 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 128 0.25 4 0.005 0.025 0.125 256 64 128 32 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 32 0.025 0.002 0.025 1 0.25 0.5 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 16 0.0625 0.01 0.002 4 0.002 0.005 2 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.01 0.025 0.5 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 0.25 2 32 8 32 16 >=64 0.25 >=64 0.5 2 >=64 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.25 8 8 4 >=64 0.25 2 1 16 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 8 1 4 16 2 1 4 2 16 1 4 1 1 1 16 4 8 1 2 1 8 4 16</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 <=0.0625 0.25 >=16 0.5 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 8 0.5 >=16 1 8 0.5 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] <=0.0625 4 8 8 2 0.5 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 1 0.125 0.125 <=0.025 <=0.025 0.0625 >=8 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 2 0.0625 1 >=8 0.125 2 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.125 1 >=8 0.5 4 0.25 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 42 48 44 25 31 46 49 21 30 49 22 46 44 21 20 47 33 47 44 45 13 17 24 44</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 36 15 45 10 35 19 20 36 49 43 22 38 49 45 47 23 28 27 27 41 50 41 48 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 17 15 16 11 13 11 11 14 14 14 15 15 13 15 17 12 12 17 15 16 17 14 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 14 15 15 17 12 11 17 15 13 16 12 11 12 13 14 15 11 16 13 12 12 13 16 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 24 15 18 17 26 18 19 27 27 19 26 25 25 26 24 27 21 15 15 24 16 18 18 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 24 20 19 16 23 16 17 25 26 15 23 18 18 19 26 18 15 16 25 24 27 23 16 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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