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@@ -38,7 +38,7 @@
     
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@@ -176,7 +176,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
       <img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
             
-            <h4 data-toc-skip class="date">18 February 2023</h4>
+            <h4 data-toc-skip class="date">22 February 2023</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
       <div class="d-none name"><code>datasets.Rmd</code></div>
@@ -203,7 +203,7 @@ column names:<br><em>mo</em>, <em>fullname</em>, <em>status</em>, <em>kingdom</e
 <em>genus</em>, <em>species</em>, <em>subspecies</em>, <em>rank</em>,
 <em>ref</em>, <em>source</em>, <em>lpsn</em>, <em>lpsn_parent</em>,
 <em>lpsn_renamed_to</em>, <em>gbif</em>, <em>gbif_parent</em>,
-<em>gbif_renamed_to</em>, <em>prevalence</em> and <em>snomed</em>.</p>
+<em>gbif_renamed_to</em>, <em>prevalence</em>, and <em>snomed</em>.</p>
 <p>This data set is in R available as <code>microorganisms</code>, after
 you load the <code>AMR</code> package.</p>
 <p>It was last updated on 6 February 2023 10:57:22 UTC. Find more info
@@ -502,10 +502,10 @@ Set Name ‘Microoganism’, OID 2.16.840.1.114222.4.11.1009 (v12). URL: <a href
 column names:<br><em>ab</em>, <em>cid</em>, <em>name</em>, <em>group</em>, <em>atc</em>,
 <em>atc_group1</em>, <em>atc_group2</em>, <em>abbreviations</em>,
 <em>synonyms</em>, <em>oral_ddd</em>, <em>oral_units</em>,
-<em>iv_ddd</em>, <em>iv_units</em> and <em>loinc</em>.</p>
+<em>iv_ddd</em>, <em>iv_units</em>, and <em>loinc</em>.</p>
 <p>This data set is in R available as <code>antibiotics</code>, after
 you load the <code>AMR</code> package.</p>
-<p>It was last updated on 30 October 2022 20:05:46 UTC. Find more info
+<p>It was last updated on 22 February 2023 13:38:57 UTC. Find more info
 about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
 <p><strong>Direct download links:</strong></p>
 <ul>
@@ -701,7 +701,7 @@ inhibitors</td>
 <p>A data set with 120 rows and 11 columns, containing the following
 column names:<br><em>av</em>, <em>name</em>, <em>atc</em>, <em>cid</em>,
 <em>atc_group</em>, <em>synonyms</em>, <em>oral_ddd</em>,
-<em>oral_units</em>, <em>iv_ddd</em>, <em>iv_units</em> and
+<em>oral_units</em>, <em>iv_ddd</em>, <em>iv_units</em>, and
 <em>loinc</em>.</p>
 <p>This data set is in R available as <code>antivirals</code>, after you
 load the <code>AMR</code> package.</p>
@@ -880,7 +880,7 @@ inhibitors</td>
 <p>A data set with 18 308 rows and 11 columns, containing the following
 column names:<br><em>guideline</em>, <em>method</em>, <em>site</em>, <em>mo</em>,
 <em>rank_index</em>, <em>ab</em>, <em>ref_tbl</em>, <em>disk_dose</em>,
-<em>breakpoint_S</em>, <em>breakpoint_R</em> and <em>uti</em>.</p>
+<em>breakpoint_S</em>, <em>breakpoint_R</em>, and <em>uti</em>.</p>
 <p>This data set is in R available as <code>clinical_breakpoints</code>,
 after you load the <code>AMR</code> package.</p>
 <p>It was last updated on 21 January 2023 22:47:20 UTC. Find more info
@@ -1341,7 +1341,7 @@ v3.3</a> (2021).</p>
 <p>A data set with 336 rows and 9 columns, containing the following
 column names:<br><em>ab</em>, <em>name</em>, <em>type</em>, <em>dose</em>,
 <em>dose_times</em>, <em>administration</em>, <em>notes</em>,
-<em>original_txt</em> and <em>eucast_version</em>.</p>
+<em>original_txt</em>, and <em>eucast_version</em>.</p>
 <p>This data set is in R available as <code>dosage</code>, after you
 load the <code>AMR</code> package.</p>
 <p>It was last updated on 14 November 2022 14:20:39 UTC. Find more info
@@ -1492,7 +1492,7 @@ column names:<br><em>date</em>, <em>patient</em>, <em>age</em>, <em>gender</em>,
 <em>CIP</em>, <em>MFX</em>, <em>VAN</em>, <em>TEC</em>, <em>TCY</em>,
 <em>TGC</em>, <em>DOX</em>, <em>ERY</em>, <em>CLI</em>, <em>AZM</em>,
 <em>IPM</em>, <em>MEM</em>, <em>MTR</em>, <em>CHL</em>, <em>COL</em>,
-<em>MUP</em> and <em>RIF</em>.</p>
+<em>MUP</em>, and <em>RIF</em>.</p>
 <p>This data set is in R available as <code>example_isolates</code>,
 after you load the <code>AMR</code> package.</p>
 <p>It was last updated on 21 January 2023 22:47:20 UTC. Find more info
@@ -1903,7 +1903,7 @@ Practice<a class="anchor" aria-label="anchor" href="#example_isolates_unclean-ex
 </h2>
 <p>A data set with 3 000 rows and 8 columns, containing the following
 column names:<br><em>patient_id</em>, <em>hospital</em>, <em>date</em>,
-<em>bacteria</em>, <em>AMX</em>, <em>AMC</em>, <em>CIP</em> and
+<em>bacteria</em>, <em>AMX</em>, <em>AMC</em>, <em>CIP</em>, and
 <em>GEN</em>.</p>
 <p>This data set is in R available as
 <code>example_isolates_unclean</code>, after you load the