P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-13 04:42:09 +02:00
Code Releases Activity

Built site for AMR: 1.8.2.9138@dad2530

Browse Source
This commit is contained in:
github-actions
2023-02-22 13:47:35 +00:00
parent 8685119254
commit 69dc8795ae
104 changed files with 827 additions and 856 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
reference/microorganisms.html
View File

@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9137</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9138</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -165,7 +165,7 @@
<li><p><code>gbif</code><br> Identifier ('taxonID') of the Global Biodiversity Information Facility (GBIF)</p></li>
<li><p><code>gbif_parent</code><br> GBIF identifier of the parent taxon</p></li>
<li><p><code>gbif_renamed_to</code><br> GBIF identifier of the currently valid taxon</p></li>
<li><p><code>source</code><br> Either "GBIF", "LPSN" or "manually added" (see <em>Source</em>)</p></li>
<li><p><code>source</code><br> Either "GBIF", "LPSN", or "manually added" (see <em>Source</em>)</p></li>
<li><p><code>prevalence</code><br> Prevalence of the microorganism according to Bartlett <em>et al.</em> (2022, <a href="https://doi.org/10.1099/mic.0.001269" class="external-link">doi:10.1099/mic.0.001269</a>
), see <code><a href="mo_matching_score.html">mo_matching_score()</a></code> for the full explanation</p></li>
<li><p><code>snomed</code><br> Systematized Nomenclature of Medicine (SNOMED) code of the microorganism, version of 1 July, 2021 (see <em>Source</em>). Use <code><a href="mo_property.html">mo_snomed()</a></code> to retrieve it quickly, see <code><a href="mo_property.html">mo_property()</a></code>.</p></li>