P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-26 10:37:54 +02:00
Code Releases Activity

(v3.0.0.9015) plotting fix

Browse Source
This commit is contained in:
github-actions[bot]
2025-07-19 14:06:36 +02:00
parent 49274f010b
commit 6cb724a208
5 changed files with 6 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
DESCRIPTION
View File

@ -1,6 +1,6 @@
Package: AMR
Version: 3.0.0.9014
Date: 2025-07-18
Version: 3.0.0.9015
Date: 2025-07-19
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by

2
NEWS.md
View File

@ -1,4 +1,4 @@
# AMR 3.0.0.9014
# AMR 3.0.0.9015
This is primarily a bugfix release, though we added one nice feature too.

2
R/ggplot_sir.R
View File

@ -177,8 +177,8 @@ ggplot_sir <- function(data,
nrow = NULL,
colours = c(
S = "#3CAEA3",
SI = "#3CAEA3",
SDD = "#8FD6C4",
SI = "#3CAEA3",
I = "#F6D55C",
IR = "#ED553B",
R = "#ED553B"

2
R/plotting.R
View File

@ -1490,7 +1490,7 @@ labels_sir_count <- function(position = NULL,
}
expand_SIR_colours <- function(colours_SIR, unname = TRUE) {
sir_order <- c("S", "SDD", "I", "R")
sir_order <- c("S", "SDD", "SI", "I", "IR", "R")
if (is.null(names(colours_SIR))) {
if (length(colours_SIR) == 1) {

2
man/ggplot_sir.Rd
View File

@ -9,7 +9,7 @@ ggplot_sir(data, position = NULL, x = "antibiotic",
fill = "interpretation", facet = NULL, breaks = seq(0, 1, 0.1),
limits = NULL, translate_ab = "name", combine_SI = TRUE,
minimum = 30, language = get_AMR_locale(), nrow = NULL, colours = c(S
= "#3CAEA3", SI = "#3CAEA3", SDD = "#8FD6C4", I = "#F6D55C", IR = "#ED553B",
= "#3CAEA3", SDD = "#8FD6C4", SI = "#3CAEA3", I = "#F6D55C", IR = "#ED553B",
R = "#ED553B"), datalabels = TRUE, datalabels.size = 2.5,
datalabels.colour = "grey15", title = NULL, subtitle = NULL,
caption = NULL, x.title = "Antimicrobial", y.title = "Proportion", ...)